BtaINT0105540 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009348 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
Coordinates
chr28:29074151-29078958:+
Coord C1 exon
chr28:29074151-29074211
Coord A exon
chr28:29074212-29078583
Coord C2 exon
chr28:29078584-29078958
Length
4372 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GGTGTCCTTTTCATTCCCAGCCC
3' ss Score
7.77
Exon sequences
Seq C1 exon
ATGCCTCAGCTCCTGCTTCTCGCCTGCCTCCTCATCATAGTAACACGGGTGGCACCCAGGG
Seq A exon
GTGAGTCTTGCGTCAAGTACTTGGCACAATATTGGTTTTTGTTGGAGGAATTTGCTGTTATGTACAGGTTGTTAAGAGCAAGATTCCAGTATCTTAAATACTGGTTCTAGAATAGTATAAGAAAAGTCATTGATAACCTATGGAGATATGTTTTCAGAGAATTTCATTTCATGTTCCATTTAGCCTCTCACCTGGCATCCAAAATTTCCATGGATCTGCCAAATCCAAACAACTTTCCACGAGCTAAATATTTCTTGGAGTATGTGTAAAAGGGTTCTAACCTCTTCATTTTCTAGGCACTTTTATAGTCCTAACTTTAAGAGCAAAAAAAAAAAAAAAAAAGATTTTCAGAGTGGAGGATAGAGTTTTTCCTTTAACAAATACAGGGGACTAACTGTGCCCATAAAGGCACAGATCTGGATAAATCAGACTTCTTAGGTTTGACTTCTTAAAATACGACTTTTGCACTGACTGAGTGAATCTTAAACTCTCTCCCCACCCAGCTTTGGTACAAAACAGGCCAACAAAGCCAAATTTTCATTACAGTTAGAAACAATTTTCTCTCTCCTTTTCCCATTAGAATTTAAGTTCTAACTAGAAGACAGAGTGAGAAGAGGCTGAGATGAAGAGAACCATACTCCTTGGCATTTTGGGGAAGTTCAGTGTTTAGCTGCCCCTATTTCTTTGGGGTACCTAAGGCCTTGCTCTAGTAGTTTTAAGAATAAACAATTAAAACTAGACTTGAGACAGTAAGGAGACATGGAAAATTTAATGTCATGTGGTCCAGGGGATGGGACCCTGGGACCCTGGGACCGAGAAAGGTATAGGCAAAAACTGAAGAAATCGAAACTGTGGACTTGAGTTAAGCTATCAACAGTGGTTCATTAATTGTGGCAAAGATAACCATACTAGTGTACGATTATCTCATGAGGGGAAGCTGGGTGCCAGAAGATGTGAACTCTTTATACAGTCTTCTCAACTATTCTCTACATCTAAAACTGGTCTAAAAAATAGTCCTAAAGATAAGTCTGAGCCAAGATTAATCACCCTGTATCTGCTGCCAGTAAGTAACCAAGAGTTGCTTGAGCCAAAGTCGTCCTTCCCTCAACTTCCTCTCTGCTTTCTCCCCACTCTCTTCCCTGGCTTAACTGCGCATTACCTCCTGTACCCTTCCATCAGACGCGTTCTCCCTTCTTAGATCTTTTTTATTTTAATTACCCTGCCCCCCAGCACTTCTAAGACGTTTGACTCCAAGCCATAAAATGGGAAAACTTTAGAGGCTGGGGACTTTTTGAGGTGGGGGTGAGGTTGCCTGAGAGGAGAGAAGTGAGAAAAAAGGAAAAGAAGGGCCAGAGAAGAGGGGAGGTGGGAGGGAAGGAAGTNGAAGGGGGAGAGGAAAAAAAGAGAAGGTGGGTTTCCGGCCTAAGAGAGAGAGAGAGGGCGAAGAATCGGGCGACCAGCCGAGGGGCGGGGCCGGGGGTGCGGACCAGGACCGTCGAGGACTCCTGGTCCCCGGGGATGACAGGGCGGCGATGCTGACATTTGCTGTCCGCTTTGGGCCGCCGAGAGGTGCTGGCCCCTCGTCGCACGGACATCCGCGCCGCTTCCCGGCTCAGGGGATACGGGAGGGGCAGCTGGCCAGGGGGCTGATGGGCGAGAATCCTGGTAAAGGCTGACCGGCTCTCTGCCAGCCAGGCCCCCTGGCTTGAACTTCGAGAGCAATCCACCCGGCTGTTTTCATTTGAGGAGTGTATATATGAGTGTGTGTACATATATCAGCAGTTCAGGACGCAGCATGTACAATACCGAATTCTGGCCTCCACACTGAGTCTGAAAGCAGGAATTAACACCAGTGGCCAGATTATTAAAGGATTGAAGTACTCCCTTAAAAGGGGGGTGAGTGGAATGGGTTTATTTAATGTTAGAAAATATTGCATGAGTAACTTTTAATATATGTTTATTTTACAGAAGATAGTAAATTTCTATTTGTGCCATATATCCCTACAAGAGAAGAAATAAACTTTTAACAAATAGCGCAAGAAATGATAGTTATATTTAAGGAAAAACTTTATAAATCATGAAATAGTTACTGAGGGAGGTTTAGGAATTTCTGTAAAAGCCATTACAAGTTAAGTGCCTAACCATTTCTTGTAAAATTAGAGCCAAGGAGATGAACCAAATATTTCTATGAATATATAATCACCTGTGAAATTGCCCTGGAAACCTTTCTTCATAAGAGAAAACCACAGCTGGGAGAGCTGATGAGGGAACGTCTCCCTTTTCAGAGGGTAGAGAGTCCGTATGTGGACATTTCTTCCCCTCGAGAGACATCAAACCCTGGTCTAGGACACAGCTGGGGTACCTCAGGGACATTTTAAGGAGGGTTGTGCCTTCCATGTGTAACTCTGCAAAAGTTTTATTTTAGAATATGCAATGTTCTACTCATTTCTTGTCCTTGTTATATTCTCAGCGGGGCACTAGGCTACGCCCTCCTCTACATGTGACTGAAGTTTTGAGAGTAAACTTGAATTGGAAATGTAGACTGGGAAAATTCAACATATTTTCTTGACAACTTATCAACAAGGCCCATCACATTTAATTATTGTGCAGTATTTACTAAAGCTGAATTTCTTGTCCTTTAAGAGTACTAGCCTTGATATGAATTCCCTGCCTACAATGTCAATTAAATCAGCTTCACATGCATTAAGAAGTTTAGATGTCCTCTGGCTAGGTCTCCTTTCTAGAATATCTTGATTTTATTGTAAGATTCTTTATAAGCAAAATTTGCCTATGTTAACTCAGCGTTTTCCTGAAATTGAGAGACGCAGTGAGAATACTGGAGATATTGCTGTCTTCAGTCATTAAAATGGTTTTGATAAGATACTTGTCTATGTTATTTATGCCTTAAAAATGCATGCTTGAAATGTTGCTGTATTCTAGACAGTGATGCCATGGCTAATTGTGAAGACACGAAGTTCATGATATTTTCAATAAGCTGGTGGAACATGTACCCACATTCACGTGGAGACTGCCCTTGCCGCTATACGGTGTATTTCAAAGCATGTGCCAGAGGCCTTTTACTTCTCAGTAGAATAAGTTTACGTATTTATTACCAAGCCAAACTACCTACTAGTACAAAATTCCACCCATAATCGTGCTTATAAATGACCATCTAGTTGGACCATCCAGCCTTTTTCAGAATATCCGAAGATGAAGAGCTTACCACACTGTGATACAGCTTCTCCAATACTGGGCTTCCCATGTGGCACTCGTGGTAAAGAACCCACCTGCCAATGCAGAAAACATAATGAGAAACGCCTGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGCATGGAAATCTACTCCGTGTATTCTTGCCTGGAGAATCCCATGGACAGAGACGCCTTGCAGTCTACAGTCCACGGGGGGTCACAAGAGTCGGACACGACTTAGCAATCAAACCACCATTACTGGATAGGTGAACTGAAATGCACTTCCCCATAACAATTTGTTTTGTCATTGTAACAGAATACCTAATTCCTCTTTCACAAGCCTTTTCCAGATTTTTTGAAAAGTAATACATAATATGCAGGGTTTTGTTTTTTTTTTTCTTCTCTCCAAATGATAGTTCTCAGCTTCTTCCCCAGTAAATAATTGTTAGGCTCCCTTCTAAATCTGGTCACCATCCTCTGGACATCAGGTTTGTCCATTACTTTCATAAAGTATAGCCTCCTAGTATGAACACAGTACTCAAAATCCAGTCTGACCAGTGCAGTGTTCAGTAAGATTATAACTTCCTTTGGTCTGAACAACAATCCTATCAGAGGAATACTGTGGATAAAAGGTTTAGTCCAATGCAAACACAGAGCCTTAAGTAGATTTGAAATAATTTTTCAAATGTAAAAGGCATTTATGAAATATGTTTCCATCAACTTGAAGAATCTTAAACAACTGCTTTTAGGGACTTTAGATTACTTCTTTCTTGAAATCTAAGATCAAGAAAGTAAACTCAGGCTATTGCTGCTGCTGCTGCTACTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCATAGACGGCAGCCCACCAGGCTTCCCGTCCCTAGGATTCTCCAGGCCAGAACACTGGAGTGGGTTGCCATTTCCTCCTCCAGTGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCAGACTCTAGCGATCCCATGGACTGCAGCCTATCAGGCTCCCCCGTCCATGGGATTTTCTAGGCAAAAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGCAGGCTACTGCCACTGTGACCCAAATCATCAAGGTGCCTCTGAGGTGTCCTTTTCATTCCCAG
Seq C2 exon
CCCTAGACCCTTGTTCTGCTTACATCAGTCTGAACGAGCCATGGAGGAACACTGAGCACCAATTCGATGAGTCTCGAGGTTCCCCTCTATGTGACAACAGTGTGGACGGGGAGTGGTACCGCTTCACAGGCATGGCAGGGGATGCTATGCCCACCTTCTGCATACCGGAAAACCACTGCGGAACCCATGCACCTGTCTGGCTCAATGGCAGCCACCCTCTGGAAGGTGATGGCATTGTGCAACGCCAGGCCTGCGCGAGCTTCAACGGAAACTGCTGCCTATGGAACACCACCGTGGAGGTTAAGTCCTGCCCTGGAGGCTACTATGTGTATCGTCTGACCAAGCCCAGCGTCTGCTTTCATGTCTACTGTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009348:ENSBTAT00000063296:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]