DreINT0108271 @ danRer10
Intron Retention
Gene
ENSDARG00000087227 | oit3
Description
oncoprotein induced transcript 3 [Source:ZFIN;Acc:ZDB-GENE-130530-907]
Coordinates
chr13:4575305-4578432:-
Coord C1 exon
chr13:4578285-4578432
Coord A exon
chr13:4575680-4578284
Coord C2 exon
chr13:4575305-4575679
Length
2605 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
CACTTTCAATCTCTTATCAGCCT
3' ss Score
6.35
Exon sequences
Seq C1 exon
ACCACAAAGCTCTTCGAAAACCTTAAGCATTTTGACAGGAACGGCTGGATGTACATCTGTGACTTTCGGGTTCTGCTGTATCTACAGTTGGACATGCTTTTTACAGTGTTTGTTGTTCTGCAAGCTGTGAGTGATACACAGGCCATAG
Seq A exon
GTAAGCACTGACTGTTTCATGATAGCCTCACTGCAATGTAAAATATATATCTGTTAATTAATGGTTTCCATATTTTATGATTCACAAGTGTTTTCCTTTTATTTGTGGTTGTGAACCGCATTATGGGATTATATTGATCTCTGCTCTGTCGACTTTTGATGTAAAAAATTCAACTCTACAGTAAATCAAAGTGACTATTATTGACATTTTAGTGGTTTGAATTAATATAATGTGTAAGAATTAACATAGAGAGAAATAAGTCTGTAAAATAAGAGAAAATGTGCTGCAGTTTATTATGTACTGTAATATACACCACCAAACCAGACAACATATCACTTCAAACGATTAATAATGTTCATAAAAGTCACTTTTTCAAACTTTTCAAGGTTAAAAGTTGTTTCTCAAAGTTAAAAGTTCTTATAATGCAATTCAAAAGCATAAAAAAATGGGAAAAACTTAAAAAACTGAATCACAAAATATGGAAAACTGCTAAATTTTAGATAATATTAGTATGTATTCTTATTAATATGCATATTAAGTGAGTTTTATTCTATACTATGTTGTTAGTCTATTGATATGACAACATTTTTAAATTCAACACAGAGTTTTAAGACATGTGAGTTGTGTTGTTGCTAATGCTTGCAGTGCATTTTGAGAAATAAAGTTTTAAAAATTTAAAACTGCTTTTATTATAGCCAAAATAAATCAAATAATAAAAAACCTATTATAGGATATACGGTGACAATTTCCTTGCTCTGTTACACATAATTTGGGAAATTAAAAAAAAAAAAGTAAAAACAAAATCGCATTTGACATCAACTAGTGCCAAAAGATGCCATGGAAATAAGAAACATAAAGAAAAAAAAAAGTATTCTGGATGAATATATAAAGCACATTGATGATTTATTGTAGCGCTGTCCAGGAATGCTGTGTTTACAGTAAACATTATTGACCTGAACATCCGCTTCTCCTTGACCTCCGGCTGTTTTTGTATCTGTTGAACATCCCTATCTACAGTCTGCATGCACTGATAGTATTACACTCTTATTTACATTCAAAAAATATTTTTTTAAGGCACAATTACAGTAAATGATACTTCAATACTTTAATGTGCTTTGGGAGGAATCATATCTCAAATCATAGGACATGTTAAAGGCATAGTTCACCCAAAACTGAAAATTCTGTCGTTGTTTACTCACCCATTACTTGTTTCAGATCTGTTTTACTTTCATAATTTTGTAAAACACAAAAGAAGACGTTTTGAAGAAAGCTGAAAACCGGTGACTTGACTTCCATTTGTTTTTCCTACTAAGGAAGTCAATGGTTACAGGTTTTTAACTTACTTCGTAATATCTTATTTGGTGTTCAACAGAAGAAAGAAACTCATAGAGGGTTTGAACCACACTGAAGGTGAATAAATAGTCAGTAAATATTCATTTTTGGGTGAACCATCCCTTGAAAGGGACTATGTGAGTTCTTCTGACTGAAAAAAAGGTTGAATTTAGGTAGTTTGTTTTAGTAGTTCAACAGTGTGTTTTCGCCAGTGTTGAGTTTTGTTTTATCTGAGCAGAACATTTACTGTGGAAAAGATTCTCCTTCTATGCCTCATCAAGCTGCTGACTTTCATTGACTAATGTTCATTCGTTCCTTATGCTGCATCATTTTTCATTTCCGCATGGTCCAGCAAAGCAAGCCAACTTCACCTAGGACCTAATTCATTTGTGTTCGGGAGGGTGCAGTGGTGCAGTGTGGAGTATTGATTAAGTCTTTGAAATCTGCCAACAAACTGAGGGAAAAGGACTTTGCGCCGACAGATCTTATTTAACAAGCAGTTTCATGTTCCTTCCATAACGTGATTTCCTTGGTAGTGTTTTAATCATCCTGCTCGGTTGAAAAGTTCAGGAGCAGACGGTGTTCAGAATATTAGGGTTTGCTTTTACTTTACTTTTTTTTTTTTTTTTTTTGGAAAATAGGCAAATTTTACAACTTATTTTTTTAAAACTATACATTCAACTATACACCACATACAGTCATAGTCAAAATTATTAGCTCTCCTTTTCTTTGTCAAATATTTCCAAATGATGTTTAACAGAGCAAGAAATTTTTCACAGTATTTGCTATAACATTTTTTCCTCTGAAGAAAGTCTTATTTGTTTTATTTAGGTTAAAATAAAAGCAGTTTTAAACTTTTTAAAAACCATTTTAAGGTCAATATTATTAGCCCCCTTAAAGGTGCAATATGTAAGTAAGACATCGAGTGAAATTTGCAACAATTTCAAAAACTCCTTTTCATATTTTCATATTGTCAAAATGGGGTATTGTGTGTAGAATTTTGAGAAGATAAATGAATTTAATACGTTCAGGAATAAGGCTGTAACATAAAAAAATGTGGAAAAAGTGATGTGCTATAAATACTTTCCATATGCACTGTAATGCATACATAAATGCATATAAATGCTCATAGTTTTAGAAAAAATCTATATATTAAAACCCTTCAAGGATTTAAGATGCTGATGAATGTTTGTAAACAAAACAATAATTATTATTGCTATGCAAATAAACTTGGATAAATGGCCAGTTCTGACCACTTTCAATCTCTTATCAG
Seq C2 exon
CCTTAGATCCCTGCTCAGCGTACATTAGTCTGAACGAACCATGGAGGAACACTGACTACCATGTCAACAACTCTGCGGGTGTCCCTCTGTGCGACCGGCATGTATCAGGGGAATGGTATCGCTTCACGGGTATGGCTGGAGATGCTATGCCAACCTTCTGTATCCAAGAAAACCACTGTGGAACCCATGCGCCCATTTGGCTGAATGGGAGTCACCCTGGGCCTAGTGATGGAGTTGTTACTCTATCTGCGTGTGCTAGCTTCAATAATAACTGCTGCCATTGGACTGCTAGTGTGGAGATAAAGGCCTGTCCGAGAGGTTACTATGTCTATCGTTTACCCCGGCCCTCTGTCTGCTTCCACGTTTACTGTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087227:ENSDART00000128422:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]