GgaINT0044667 @ galGal4
Intron Retention
Gene
ENSGALG00000004345 | OIT3
Description
oncoprotein induced transcript 3 [Source:HGNC Symbol;Acc:HGNC:29953]
Coordinates
chr6:10825504-10829615:-
Coord C1 exon
chr6:10829507-10829615
Coord A exon
chr6:10825879-10829506
Coord C2 exon
chr6:10825504-10825878
Length
3628 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTCTTGCTGCATTCCTCAGCCC
3' ss Score
6.16
Exon sequences
Seq C1 exon
CAAGGCTCTGTTACTCGAATATTATCTGTTCCTTGGTTGAGTGGGATGTTCCAGTACTTGTTTTTCTGTCTCTGCTTCGTTGTCCAGCTGCAGCCAGCTTCTTCAATGG
Seq A exon
GTGAGTGAAGAGGCATTGCCTTCAAGCTTATTCCTTCCATCATCTTTAAGATCCATGGCAGACATTAATATTCTCAGGTGAAAGACTGGGAGATGTGAGAGTGATCTCTTTTCTTTGAAGGCAGTGTGAGATTCTCTCCAACTGGAAAGATCTTTGCAGAGCTTGAAGTCTTACAGATTGGGACAATCTTCACTGCCAAGCGCTGTGGGATTTCCTTCTCCCTTAGAAGGGGAGACTCCACAGGAAGCTACTGAGCTACTTTTTCACTCGTTTTCCTGACAAGTCTTAAGTGAAATTGGAGTTGTAACGCAGTGCTGCTCGTTTTGTTGCTTGTTTGTGTGGGGGCAGAGACTTCCAGTTACACAATGCACAGGGGATCAATCTCTGCAGAATGGCGGGCTTATGAATGCTTGCTGGAGCCTGATTTGTCATCCAGTATATGTGCTAGCATGTCAGCTAGAGAGCTAATGATATCATCAAGGTTACAAATGGCAAGGCTTTACTTGATAGCTGGTGCTTGTCAGACTGAATTACTTGGTCCATGCTGAAGGAGTTGGGAAGGAAAAAAATTGAGCCAAGAAAAATGAAAAATGGAAGGGACTGGAGGCCATTGTATGTCTTGTGCAAAACCCTAGTGTTTCCAGCCTCTGGGGAGAGCAGATTGATTGGTTTGTCCCACATTTTTGTGGAGTTTCTTTGTAAAAACTCAAATTAGTTTTTGGTAAGCTGCACTGCCAAAGAGTGCCTTGTGTCTGCAGGGGAGTTGGCCTGGGGCAGCCTTGGCAGTCCAGGGGTGCCTGCGATGGTCTGCGGTGTTCCAAAGAGCAAAGTCTGCTTTTTTCTGTGTGTCTGCCTCCCCTTTACTCCTGCCTGAACCTCTCAGGTAAATGGAAGATGGGAAGGTGTGCAATTTCATTCCCCTGAAGTGCCTGCTTCCAGCTCCCTCTGAGCTGTTGCATCTTCATCTCAGTAAATTTTGTCTTTAAACTCTTTCCTGTCTGTTTAGGAGACAACGTGAGCTCCCTGAGTGAGTGTTTGCAGAGTCTATCTACAAAGGATATTTCATAAAGTTAATTATACTGTATGAGAGCTAATGAGCATGTGTATTTCTGGTGCTGCCCAGCCGGGAAACTGACAGGGCATTCCTTGCTTCGCCTCATTTGGCTTTTAACACAAGTTTTTAATCTTAGTCAGTGGCTCACCCTTAGGCCGTACCAAATCATGTTGTGGAAATCAAATGTGGGAAGCCTGAAGGAAGCTCTTTTCAGCTGTGCACAAAGAAGAGACAGGACCCGTCTTTAACTGTCCTGAGAAGTCAAGCAAGCTCCTGGAGGGTGGGATTGAACAGCACTGCTGCTGTCTGTGGTTAGGGGGAGGGAGGGAGAGTCAGGAAAGAGAGCTTGTGGAGAACTGCGTGGTGAATTCTGCCAGAGACTCCCGTTGCAGGCCCCCTTCTCCTCGGGAATGCTGAGGGCTGCTTTTGGTGGGAGTAAATCTGCTCCTCTGTGCGTCTTGTGAATTACCGCATTATGGATTCCCTGCCTAACAGACCTGTTCTCCTCGTGCTGGCTTGCAGCTCTGCAGCACTCTTGTGGCTACAGCAGCTGCTCCTGTTTTTATGCTGCATTAGAGGCCAAACAAAACGTGTCTGTGGGTGAGGATGGCGTAACGGTTTTGTTCAAGAGAAATGTTGTATTTATGAGGAGGTACAAGATAGCACGTCAGCAGGGCAGATGTTTACAGAGGATACGGCTCAATTAGAGTGAAAGCCCATTTTCAGAAGCACATATGGTTCTCCCTTGAAAGCCAGTGAGGCAAATCAAAATTCTGAAGCAAGATTTGTCTACATCCAGACCACTTTAATAGAAACAACATAATGTCCCCCCACATTGCATCCCACTGTTGTTCAAACAAAATGAAAGGACAATTTTAGAACTTGAGATGCGATGTGGGAAGTACAGTGTATCCCAGTCTCGATAGGCTTTAATCAGAATGATTGGTTTTATTAGCTTAATTCCAGCAAGCAGAAATCAATTCTCCTTACTCGAGACAATATTAGCATTCATTTTGCTTATTAGGGAATAGCTAGTTAAGGGTAAGTGGTGCTTAATCAGGTATTAAATGTATGTGGAAATGAAACCCCTGGACTTGTACTGCGGAAGCTGCCAAATCAGGGTTAATGAGGAGATTGCTGAAAATGTAATGAACACTTCGATTCTTTTTTTTTTCTCCCTGTGCTGTTCTTCTGTTGTAATGGTTTGCATAAGGTTCAGAAAGGCCTCTAAGAAGGGGCATGCTCCTTGAGCGTGACACATACATACCAGGAGGTCTCTGTGTTTAGATTTTGCCCTTGCAGTCACTCACTTTGCATCCAAACATTGGAACCCTTATGGAGCCAGAGTGGGTTTTTTGGCTTGCAAGGAACATGATTGAGTAGAGTTGAACATTTTTTATTCAGACCTTCACGCCCTCTAGATTTTAAGATGAGAAAGAGATATGGGGAAGCTGTGTCAGATGCTGTGAGGCAATGTCATCCCACAAAAGCTTAATAGATGCTGTAAATCATAAAGGTGGGGTGCTTTTGGCAGGGGGGAAAGTGGGTGACAGAAGGTGAAGAAGACCAGGGTACATCTAAGTGGATCTTTAAATACAGGGCACTGCCACTTCTCACTCTCACCCCACTGCAGCATTTTACAGAGTGTACGATTTGAGTTATATCTCTTTAATCTCAGCTTGGTATAGATGTACAGAGCTGCACAGGAGATGATGAGGAACAAAAGACCAGGTAAATGGAGCAGGGCCACTTTCTCCTACCTCACCTATCTCAGAGACAGTCTGCTGGGCTACAGATCGGCTCCACTGTGATCTGGGAGAGCAGTTGTATCTGTTTAAAATTGTGCCCTGAAATGAGTAGGAGCTGTTAAATTACACTTACAGGTTACTTGCAGTTATACAGGTATCTAATGATTGCATATTTTCTTTCAGTTCATCTTAAAGATAGCATTCCTGTTGTATATCTTGCAGTTTGATTTTGATGCTTTGCAGGGTGATTTTGACCAGTGGTTATAATACTCAACTGTGAGGGTCGAAATGAGCTATAGGAGGACTTTCAGAGGCTGCTTAACCTGTTTGAATTCTGGTCCTCTTCTCCAAGGCATGTGGCAGTGCCACTAGGTGCTTGCAGGTGCTCAGTTAGCACCTGACACACGGGTGGATGTCCTAGGCTTGATCCTGTGCTCTCAGAACACATTTCCTCTGGCAAAATCACTCTCCAGACCTCATTTTTTGCTTATTTAATTTGCTTAAATTAAAAATTTGCTTCTTTATTTATATGTTTATTTATTTTCTGTCATGGTCTGCAGCAGCTAAAGAACAAGTCACGCTGTTGCATAATGTTGTCAGAGCTCTGTTAGTTCATCTCTTCAAAGACATTTAAGTCAAGCTGTCAGAGATTTTCCATGAGGTAGTTTGCAGGTATTGCTCTCTCACCCCAGGGATCTCTGTCTAAGTGATATGGTTAAGTCAGAAATTGGAAAAGAAATTATTTTGCATCCCTTGTAATTATAAGTCAACAACTCAATTTGATATCTACTAGATGTCCTCTCTTGTGTCTTGCTGCATTCCTCAG
Seq C2 exon
CCCTGGACCCCTGCTCCGCCTACATCAGCCTGAACGAGCCCTGGAGGAACACCGATCATCAGATAAATGGCTCCCACGGCCAGCCCACGTGCGATAACCAGATCGATGGGGAGTGGTACCGCTTCACCGGCATGGCTGGCGATGCTATGCCCACCTTCTGCATCCCTGAGAACCACTGTGGGACGCATGCTCCCATCTGGCTGAACGGCAGCCACCCACGAGAGTCGGATGGCATCGTCTCACGCCAGGCCTGTGCCAGCTTCAATGGGAACTGCTGCCTGTGGAATACCACGATTGAGGTCAAGGCGTGTCCGGGCGGGTACTATGTCTATCACTTAACAAAGCCTAGTGTCTGTTTCCACGCGTACTGTGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004345:ENSGALT00000006932:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]