BtaINT0105901 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71885820-71886092:+
Coord C1 exon
chr17:71885820-71885923
Coord A exon
chr17:71885924-71885996
Coord C2 exon
chr17:71885997-71886092
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
AGCACCCCCTGCCTGTCCAGACA
3' ss Score
5.6
Exon sequences
Seq C1 exon
GTGCTATCCACTTAGAATTCCAGGCCAGTGGGAATCACTACGTATGGAGGAAAAGCACCTCGACTGTGCATAACATCATTGTGGGCAAGCTCTGGATTGACCAG
Seq A exon
GTCAGGGGGTGCCCCAGGGGAGGGCCACTGGGCCGGGCAGGTAGCAGCCACTGAGCACCCCCTGCCTGTCCAG
Seq C2 exon
ACAGGGGACGTTGAGATCGTGAACCATAAGACAAAGGACCGGTGCCAGCTGAAGTTCCTGCCCTACAGCTATTTCTCCAAAGAGGTGGCCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(8.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTCCAGGCCAGTGGGAA
R:
GGGCCACCTCTTTGGAGAAAT
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development