GgaINT0008016 @ galGal4
Intron Retention
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10703581-10704003:-
Coord C1 exon
chr15:10703900-10704003
Coord A exon
chr15:10703677-10703899
Coord C2 exon
chr15:10703581-10703676
Length
223 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTTCTGTGTCTTTTATCTAGTCT
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTGCCATCCACCTCGAGTTTCACTCCAGTGGGAATCACTATGTCTGGAGGAAAGTCACCTCCACCGTTCACAACATCATCGTGGGCAAGCTTTGGATCGACCAG
Seq A exon
GTCAGTGCCTATGGGCTCCTGGGGGAGCAGGGCGGTGTGGGGCCACGTCTGGCATGGGGTGTTTTACTTGGGCCCATCATACCATGGGGCTGGAGGGGCTGGAGTGGGAAGCAGATGTAGTTCTGCACTGAGGTTGGTGTGCAGCTGCACAAATGACGACTAACGGCTCATTTGTTTCCTTGCAAAGTCTCTCACTTGCTGTGGTTCTGTGTCTTTTATCTAG
Seq C2 exon
TCTGGTGAAATAGAGATTGTTAACCATAAGTCAAAAGATAAATGCCAGCTGAAATTTACCCCCTACAGCTACTTCTCCAGGGATGTCCCCCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCCACCTCGAGTTTCAC
R:
GGACATCCCTGGAGAAGTAGCT
Band lengths:
190-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]