GgaEX0011019 @ galGal4
Exon Skipping
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10703024-10704003:-
Coord C1 exon
chr15:10703900-10704003
Coord A exon
chr15:10703581-10703676
Coord C2 exon
chr15:10703024-10703208
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTGTCTTTTATCTAGTCT
3' ss Score
6.98
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGCCATCCACCTCGAGTTTCACTCCAGTGGGAATCACTATGTCTGGAGGAAAGTCACCTCCACCGTTCACAACATCATCGTGGGCAAGCTTTGGATCGACCAG
Seq A exon
TCTGGTGAAATAGAGATTGTTAACCATAAGTCAAAAGATAAATGCCAGCTGAAATTTACCCCCTACAGCTACTTCTCCAGGGATGTCCCCCGAAAG
Seq C2 exon
GTGACAGGGGTGGTGAGTGATGCTGATGGCAAAGCCCATTATGTCATGTCAGGCACGTGGGACGAGAAGATGGAGTGCTCCAAGATCGTGCAGAGCAGCCATGGCAGCGCCGGCTCAGAGGGCAAACAGAAAACTGTCTACCAGACACTGTCCCCAAAGGTCTTGTGGAAGAAGTACCCCCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'29-19,'29-17,30-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.226
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCCACCGTTCACAACAT
R:
TTTCTGTTTGCCCTCTGAGCC
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]