DreEX0052717 @ danRer10
Exon Skipping
Gene
ENSDARG00000053487 | osbp2
Description
oxysterol binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-091113-18]
Coordinates
chr10:7963475-7968296:-
Coord C1 exon
chr10:7968193-7968296
Coord A exon
chr10:7963781-7963876
Coord C2 exon
chr10:7963475-7963659
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACTCTTTGTTCTGATGCAGTCT
3' ss Score
7.02
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAACATTCACCTTAAGTTCCACACCAGCGGGAATCATTATGTGTGGAGCAAGGTGACCTCCACCGTGCACAATATTATCGTGGGCAAGCTATGGATTGATCAA
Seq A exon
TCTGGAGACATTATAATAGTGAACCACCGGAGCAAGGACACGTGCCACCTCAAATTCTCCCCTTACAGCTATTTTTCCAGAGATGTTCCCCGCAAG
Seq C2 exon
GTCACAGGCGTTGTGACGGATGGTGAAGGCAGCGCACACTACATTCTCTCCGGAACGTGGGATGAGAAAATGGAGAGTGCAAAGATCATAGAGAGCAGCCACGCCTGTGGAGGATCTGAAGGCAAACAGAAAACTGTCTATCAGACTCTCCCACCAAAACTACTGTGGAAGAAATACCCTCTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053487-'16-18,'16-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100),PF042659=TPK_B1_binding=PD(56.2=77.1)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTGGAGCAAGGTGACCT
R:
GCGTGGCTGCTCTCTATGATC
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]