HsaEX6026383 @ hg19
Exon Skipping
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:8504]
Coordinates
chr22:31289450-31289988:+
Coord C1 exon
chr22:31289450-31289553
Coord A exon
chr22:31289625-31289720
Coord C2 exon
chr22:31289804-31289988
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCACTGCCCTCCTTCGCCAGTCA
3' ss Score
6.72
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGCCATCCACTTAGAATTCCAGGCCAGTGGGAATCACTACGTGTGGAGGAAGAGCACCTCAACTGTTCACAACATCATCGTGGGCAAGCTCTGGATCGACCAG
Seq A exon
TCAGGGGACATCGAGATTGTGAACCATAAGACCAATGACCGGTGCCAGCTGAAGTTCCTGCCCTACAGCTACTTCTCCAAAGAGGCAGCCCGGAAG
Seq C2 exon
GTGACAGGAGTGGTGAGTGACAGCCAGGGCAAGGCCCATTACGTGCTGTCCGGCTCGTGGGATGAACAAATGGAGTGCTCCAAGGTCATGCATAGCAGTCCCAGCAGCCCCAGCTCTGACGGGAAGCAGAAGACAGTGTACCAGACCCTGTCAGCCAAGCTGCTGTGGAAGAAGTACCCGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.289
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(48.6=97.2)
A:
PF0123713=Oxysterol_BP=FE(14.8=100)
C2:
PF0123713=Oxysterol_BP=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCATCGTGGGCAAGCTC
R:
CACTGTCTTCTGCTTCCCGTC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)