BtaEX6073840 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71885820-71886357:+
Coord C1 exon
chr17:71885820-71885923
Coord A exon
chr17:71885997-71886092
Coord C2 exon
chr17:71886173-71886357
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGCACCCCCTGCCTGTCCAGACA
3' ss Score
5.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGCTATCCACTTAGAATTCCAGGCCAGTGGGAATCACTACGTATGGAGGAAAAGCACCTCGACTGTGCATAACATCATTGTGGGCAAGCTCTGGATTGACCAG
Seq A exon
ACAGGGGACGTTGAGATCGTGAACCATAAGACAAAGGACCGGTGCCAGCTGAAGTTCCTGCCCTACAGCTATTTCTCCAAAGAGGTGGCCCGGAAG
Seq C2 exon
GTGACTGGAGTGGTGAGTGACAGCCAGGGCAAGGCCCACTACGTGCTGTCCGGCTCCTGGGACGAGCAGATGGAGTGCGCCAAGATTGTGCAAAGCAGCCCCAGCAGCCCCAGCTCAGATGGGAAGCAGAAAACGGTCTACCAGACGCTGCCGGCCAAGCTGCTGTGGAAGAAGCACCCGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146-'26-18,'26-16,27-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(8.9=100)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTCCAGGCCAGTGGGAA
R:
AATCTTGGCGCACTCCATCTG
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]