MmuEX6083581 @ mm9
Exon Skipping
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3611697-3612232:-
Coord C1 exon
chr11:3612129-3612232
Coord A exon
chr11:3611961-3612056
Coord C2 exon
chr11:3611697-3611872
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCACCACCTGCTCTCACTAGTCA
3' ss Score
5.34
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTGCCATCCACCTAGAATTCCAGGCCAGTGGCAATCACTACGTGTGGAGGAAGAGCACCTCCACCGTGCACAACATCATCGTGGGCAAGCTCTGGATTGACCAG
Seq A exon
TCAGGGGACATTGAGATTGTGAACCACAAGACCAAGGACCGGTGCCAGCTGAAGTTCGTACCCTACAGCTACTTCTCCAAAGAGGCAGCCCGAAAG
Seq C2 exon
GTGACTGGAGTGGTGAGTGACAGCCAGGGCAAGGCCCACTACGTGCTGTCAGGTTCGTGGGATGACCAGATGGAATGTTCTAAGATTGTGCACAGCAGCCCCAGCTCTGATGGGAGACAGAAAACCGTGTACCAGACACTGCCCGCCAAACTGCTCTGGAGGAAATACCCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATCACTACGTGTGGAGG
R:
GGGCTGCTGTGCACAATCTTA
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: