RnoEX0062436 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83951498-83952021:-
Coord C1 exon
chr14:83951918-83952021
Coord A exon
chr14:83951750-83951841
Coord C2 exon
chr14:83951498-83951673
Length
92 bp
Sequences
Splice sites
3' ss Seq
CACCTGCTCTCACTAGTCAGGGG
3' ss Score
1.63
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GTGCCATCCACCTCGAATTCCAGGCCAGTGGCAATCACTACGTGTGGAGGAAGAGTACCTCCACTGTGCACAACATCATCGTGGGCAAGCTCTGGATTGACCAG
Seq A exon
GGGACATTGAGATTGTGAACCACAAGACCAAGGACCGGTGCCAGCTGAAGTTCGTGCCCTACAGCTACTTCTCCAAAGAGGCAGCCCGAAAG
Seq C2 exon
GTGACTGGAGTGGTGAGCGACAGCCAGGGCAAGGCCCACTACGTGCTGTCAGGTTCCTGGGATGAGCAGATGGAGTGTTCTAAGATTGTGCACAGCAGCCCCAGCTCTGATGGGAAGCAGAAAACCGTGTACCAGACGCTGCCAGCCAAGCTGCTATGGAGGAAATACCCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645-'49-38,'49-37,50-38
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(9.0=100)
A:
PF0123713=Oxysterol_BP=FE(8.2=100)
C2:
PF0123713=Oxysterol_BP=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCACCTCGAATTCCAGGC
R:
CTCCATCTGCTCATCCCAGGA
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]