BtaINT0105902 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71885997-71886357:+
Coord C1 exon
chr17:71885997-71886092
Coord A exon
chr17:71886093-71886172
Coord C2 exon
chr17:71886173-71886357
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
AGCCCTGCCAATGCCCACAGGTG
3' ss Score
7.79
Exon sequences
Seq C1 exon
ACAGGGGACGTTGAGATCGTGAACCATAAGACAAAGGACCGGTGCCAGCTGAAGTTCCTGCCCTACAGCTATTTCTCCAAAGAGGTGGCCCGGAAG
Seq A exon
GTAAGCACGGCCGCCTCTCCAAGTCTTGGGCGACCCCGGGGTGGGGCACGTGCCCACACCAGCCCTGCCAATGCCCACAG
Seq C2 exon
GTGACTGGAGTGGTGAGTGACAGCCAGGGCAAGGCCCACTACGTGCTGTCCGGCTCCTGGGACGAGCAGATGGAGTGCGCCAAGATTGTGCAAAGCAGCCCCAGCAGCCCCAGCTCAGATGGGAAGCAGAAAACGGTCTACCAGACGCTGCCGGCCAAGCTGCTGTGGAAGAAGCACCCGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(8.2=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTTGAGATCGTGAACC
R:
AATCTTGGCGCACTCCATCTG
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development