HsaINT0118550 @ hg19
Intron Retention
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:8504]
Coordinates
chr22:31289625-31289988:+
Coord C1 exon
chr22:31289625-31289720
Coord A exon
chr22:31289721-31289803
Coord C2 exon
chr22:31289804-31289988
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GGTCCTGCCAATGTCCACAGGTG
3' ss Score
8.15
Exon sequences
Seq C1 exon
TCAGGGGACATCGAGATTGTGAACCATAAGACCAATGACCGGTGCCAGCTGAAGTTCCTGCCCTACAGCTACTTCTCCAAAGAGGCAGCCCGGAAG
Seq A exon
GTAAGCAGGACCAGCCACCTCTAAGCACCCCAGGGGGCCCAGGGCAGAGTCTGCACCTACGCTGGTCCTGCCAATGTCCACAG
Seq C2 exon
GTGACAGGAGTGGTGAGTGACAGCCAGGGCAAGGCCCATTACGTGCTGTCCGGCTCGTGGGATGAACAAATGGAGTGCTCCAAGGTCATGCATAGCAGTCCCAGCAGCCCCAGCTCTGACGGGAAGCAGAAGACAGTGTACCAGACCCTGTCAGCCAAGCTGCTGTGGAAGAAGTACCCGCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792-OSBP2:NM_030758:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PD(50.0=87.8)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTCCTGCCCTACAGCT
R:
TGTCTTCTGCTTCCCGTCAGA
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)