RnoINT0105690 @ rn6
Intron Retention
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83951498-83951845:-
Coord C1 exon
chr14:83951750-83951845
Coord A exon
chr14:83951674-83951749
Coord C2 exon
chr14:83951498-83951673
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
TGTCCTGCCAACATCCGCAGGTG
3' ss Score
9.35
Exon sequences
Seq C1 exon
TCAGGGGACATTGAGATTGTGAACCACAAGACCAAGGACCGGTGCCAGCTGAAGTTCGTGCCCTACAGCTACTTCTCCAAAGAGGCAGCCCGAAAG
Seq A exon
GTAACCAGGGTCACAGCCTGGAACCCTGTGGGCCCAGAGCAGACTGTGTGCTTATGTGTCCTGCCAACATCCGCAG
Seq C2 exon
GTGACTGGAGTGGTGAGCGACAGCCAGGGCAAGGCCCACTACGTGCTGTCAGGTTCCTGGGATGAGCAGATGGAGTGTTCTAAGATTGTGCACAGCAGCCCCAGCTCTGATGGGAAGCAGAAAACCGTGTACCAGACGCTGCCAGCCAAGCTGCTATGGAGGAAATACCCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645:ENSRNOT00000065501:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.119
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(8.2=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCGTGCCCTACAGCTACT
R:
GCGTCTGGTACACGGTTTTCT
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]