BtaINT0106005 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18491374-18491911:-
Coord C1 exon
chr2:18491774-18491911
Coord A exon
chr2:18491438-18491773
Coord C2 exon
chr2:18491374-18491437
Length
336 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTGTTTTTAACTTTCAGGTT
3' ss Score
12.15
Exon sequences
Seq C1 exon
GTTCTTATTGCTGCATTTGCAGTTTCAGGATATTGCTCCACCTATTTCAGAGCAGGAAGTAAGCCATTCAACCCTGTCCTTGGGGAGACTTATGAATGCATTAGAGAGGACAAAGGATTCCGATTTTTCTCAGAACAA
Seq A exon
GTAAGTGCCACTGGACTCAGGTTTCTGTGTAGAAACTGTAGGAGGGCTGTTTGATGATGAAAATAGCTTGTTTTTGTAAACATCTGGTTGAGATGGGTTACAATACTAGTTAACAGAAAATTCACTTAGCTTATCTATGTAATTATATCCTCTAAATGTTTTTAAGCATGAAGTTGTAAGATTTGGTAATTTACTTACACATCTTGAGAATAATGCAATAACAGAGATGGATAAGTTGAGTAACTTTTATTTAGCCAAATACATGTTGCGAAAAATGATCATTTGTGGAAGTTTTAACACTGATGTCATTGCCCTTTTTTTGTTTTTAACTTTCAG
Seq C2 exon
GTTAGCCATCACCCACCCATTTCTGCCTGTCACTGTGAATCCAAGAATTTTGTGTTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGCAGTTTCAGGATATTGCT
R:
CTTGCCAAAACACAAAATTCTTGGA
Band lengths:
190-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]