HsaINT0118684 @ hg38
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178384039-178385521:+
Coord C1 exon
chr2:178384039-178384176
Coord A exon
chr2:178384177-178385457
Coord C2 exon
chr2:178385458-178385521
Length
1281 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTTGTTTTTAATTACCAGGTT
3' ss Score
8.84
Exon sequences
Seq C1 exon
GTTCTCGTTGCCGCATTTGCAGTTTCAGGATACTGCTCCACCTATTTCAGAGCAGGAAGTAAGCCATTCAACCCAGTCCTTGGGGAGACTTATGAATGCATTAGAGAAGACAAGGGATTCCGCTTTTTCTCAGAACAG
Seq A exon
GTAAGCGCCACTGGACTCAGTGAGGTTTCTATATAGGTAAGAGGACAGTTCGGTGATGAAAGCACCATTTCGATAACAATCTGTTGGGATGGGTTATGATACCAGTTGTGAATTCGAAGTATCTGAGACAGGTCTTAATCAGTTTAGAAAGTTTATTTTGCCAAGGTTAAGGACACACCCATGACACAGCCTCAGGAGGTCCTGACAAAATGTGTCCAAGGTGTTCTGGACACAGGTTGGGTTTATACATTTTAGGGAGATATGCACCATCAATCAATATATGTAAGATGTACATTGATTCTGTCCAGAAAGGTGGGACAACTTGGAAATGGAGACTTCCAGGTCATAGGTAGATAAGAAAGGTTGCATTCTTTTGGGTCTCTGATCAGCCTTTCACTGAATACACAATTTACATGTGAGAGGGTGGTAGAGAGAGAGTCACTTATGCCTCAGTCTCACTCTGTGAATCTGCATTTTTACATAGACAGTAGGGCAGAGGAAGTAATCAGATATGCATCTCTCTCAGGTGAGCAGAAGGATGACTTTGAGTTCTGTCAATCCTTTGTCCCATACCTGTGAAGATAAGCTATCAATGTACATTGCCAGGTTGAAATTCAACAGAACTGTTTTAGGGTAAAGATCTTGAGGCCCACAAAGAATTTCCTTGTGGGCAAATTGTGAGGGAGAGAGGTAGCCTTTTTAAAAAAAAAAAAAAATCTTTGTAGCTATCTTTTTTAGGAATAAAATGGGAGGCAGGTGGTCCTGAGATTTATTTTCTTTTCACACAGTTAAGAAAACTAACACAAGAACAGAAAACCAAACACCGCATGTTCTCACTCATAAGTGGGAGTTGAACAATGAGAACACATGCACACAGGGAGGAGAACATCACACACTGGGGCCTGTTGGGGGGTGGCGAGCAAGAGGAGGGATAGCATTAGGAGAAATACCTAATGTAGGTGATGGGTTGATTGGTGCAGCAAACCACCATGGCACGTGTATACCTGTGTAACAAACCTGCACATTCTGCACATGTATCCCAGAACTTAAAGTATAATTAAAGAAAGGAAGGAAGGAAGAAAGAAAGGAAGGAAGGAAGGACGAATTCACTTCACTTATGGGCATTATTTCCCCTCTAAATTGTATAAGTTCTCAGTGTTTTTAAAGCATGAAGTCTTACAGATTTACTTATACATTTTGAGAATAATTCAGTAAGAGAAATGGATGACCATGTGGAAGTCTTAACACTGATACTGCCTTTTTTTTGTTTTTAATTACCAG
Seq C2 exon
GTTAGCCATCATCCACCCATTTCTGCCTGTCACTGTGAATCAAAGAATTTTGTGTTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156:ENST00000190611:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCGTTGCCGCATTTGC
R:
TTGCCAAAACACAAAATTCTTTGA
Band lengths:
201-1482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development