RnoINT0105813 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63440429-63441107:+
Coord C1 exon
chr3:63440429-63440566
Coord A exon
chr3:63440567-63441043
Coord C2 exon
chr3:63441044-63441107
Length
477 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTTTTTTTTAATTTCCAGGTT
3' ss Score
11.6
Exon sequences
Seq C1 exon
GTTCTCGTCGCTGCCTTTGCAGTCTCAGGGTACTGTTCCACCTACTTCAGAGCAGGAAGTAAGCCGTTCAATCCGGTCCTGGGGGAGACCTATGAGTGCATAAGAGAAGATAAGGGGTTTCGGTTCTTCTCGGAACAA
Seq A exon
GTAAGTGAGGTTGCTGTCCAAGGTAAGAGAGCGGCGCAGTGACAAGGCAAGCCTTGATAAGTGTGTGTATGGGACAGGCTAGTTTACCAGTTAACAGAAAACACACACATTCAACTGCACCCTCGTCCCCTCGAAGTGTGTGTAAGCTCTCTGCGTTTAAGCATGATGATAAATATTAACGGCTTACACTTTTGAGACGAATTTACTATTGGAACTGGATTCTCTAGTTTTGTTGGGGAAGAAGGATTTTATTTTTTAAAAAACACCATTGATGATCTGGGTATTTGTAATGTATCCTGCAATCCCAGCACTTGGATGGAGGCAGCAAAATCAGGAGTTCAAGGCCAGTCTTAGCTATGCAGGAAGTTTGAGGCCAGTCCAAGCTATGTGAGACCCTGTCACAAACAAACAAAGAAAACCATCCTGTATACGAGTTGGAATACTAACATGATTGCCCTTTTTTTTTTTAATTTCCAG
Seq C2 exon
GTTAGCCATCATCCACCCATTTCTGCCTGTCACTGTGAATCCAAGAACTTTGTGTTTTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCGTCGCTGCCTTTGC
R:
TGCCAAAACACAAAGTTCTTGGA
Band lengths:
199-676
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]