BtaINT0106014 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18533811-18535032:-
Coord C1 exon
chr2:18534979-18535032
Coord A exon
chr2:18533925-18534978
Coord C2 exon
chr2:18533811-18533924
Length
1054 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
AACCAGTCTTTTGATTTCAGATC
3' ss Score
5.9
Exon sequences
Seq C1 exon
CGTTTTTTTGTCCTGGATAATGGAATGTTAAAGTATTCAAAGGCACCACTTGAT
Seq A exon
GTAAGTAGACAAAAAGATTTGTTTCGAATTCTGCTTGAAGTGAGTCAGCACCGCAGTGTACAAGTATTGTGCCATAGTTTTCTATGTGTTTCTGTGCCTGTAAGACTTAACAACCTACCAAACTTCCATGTTGCATGGAAGGTGTGTTTTATGCTTATGTTCAAACTAGCATAAAATCTCAAACTGCCGCATGAAAATTTAACTGTTGTAATGTATGCTGTTAAAAACAGAAGCTTAAACCTAAAAGTCACCAACTAACAAAAATCACCCTTTCTGTCTTAGAAAACTCAAGTAGACTTTTTTCCCTGCATTTCTCAATAAACTATGCTTTATGTGCTTTTTCTGAGATTTAGCATGTGTTCTTACTGATGTTTTTTTAAGATTTATCTATGGACTTCATTTCTGTTTCATACATTCCTTTATCTTGAGCATCCCAGCTCTAAAATTATTCCAAATTACTTTTCTTTAATACCAAAAGTTATTGTTTGCATGCAAAACTGGAAAACGCTCTCCTTCTTATCATTGTGTGTGGGAGAAATAACAGAGGGCTTAGATTTCAGTTCTGACCCTAGCTCCTTCATGAGTCAGCTATGTGTCCTTGATCAGATGAGGGCAACCAGAAGATGAGCTGACTGCTCTGTGCACTCAATCCCAACTGCCCATTTCTACCCTGCGGCTGTCTGCTAGCTGATTACTTGGGTATGTTTGGGGTTGTAGGTCAAAGATGGACCATAGTTATTTTAGGAATCAGAAAAAGTATCTTAGGATATAAACTGTGTAATCTAGAATTACAAAGAATTGACATTATAGTTACACCAAAACAAGAATGAGATGAATAGTCTTACTTATTGAAATTGGCATGAAGTCACTGCAACTTCAGCTGTCCTCAAATTGAGGACCTTAACTTCAGAACCTTATCCATTTCCTCTCTGTTCAGGAGGTGTGATCTTCCATCTCCTGTAGGTAAATGAGAGTTTACATTAAGCTCACTTCAGTACAGAAACACATCAGATCACATACCCTTCCAGCCTTTTAACCAGTCTTTTGATTTCAG
Seq C2 exon
ATCCAAAAAGGGAAGGTCCATGGAAGCATCGATGTGGGACTCTCTGTCATGTCAATTAAAAAGAAAGCTCGGAGAATAGACCTTGACACAGAAGAACACATCTATCATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]