RnoINT0105822 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63403065-63404239:+
Coord C1 exon
chr3:63403065-63403118
Coord A exon
chr3:63403119-63404125
Coord C2 exon
chr3:63404126-63404239
Length
1007 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
CACCAATCTGTTGCTTTCAGATC
3' ss Score
8.2
Exon sequences
Seq C1 exon
CGCTTCTTTGTCCTGGATAACGGAATGTTAAAGTATTCAAAGGCGCCACTTGAC
Seq A exon
GTAAGTATCTCGTAGGGCATGTTTCTCGGGTTGACATAAGGTCATAAACACTGTAGCTATGCAAACTCTGTGCCGTGGCTCCCAGCTTTGTCTGTGCCTGAAGTATTTAACAAGCTACCCACTCTGTGTGTTCTAGAGAAGGGGTGCTTTAGGGTTATACTCAAGATAGCATAAAGATCTCAAAGTACTGCATGAATATTTAACTTTTTTTTTTTAAAGCAGAAGCTTCAACCGGAAAGTGACACATTAGTAAAATCACCCTTTCTCTCCTAGACAGAAAACCCTGCACTTTTTTTTCTTTTCACTTTGAAATAAATTCCACGATCTTTGCTTTTTTGAGATTTAAAGCCCTCCTTGTTCTTGTCACCAAAAAAAAAAAACAAAAACAAAAACAAAAACAAAAAACTGTCTTTTGTACTTAATTTGTGTTTCATTCACTTTTTATCTTGAAAACCCCAACTCATAAAAATTATTCCAAACTGCTTTCGCTTCATGTCTAAGTAGTAGTTTGCATGCAAATCTCCTCCCACATGATGTAGGGAGATGACGAAGGGCTTACATGTGGCTTTGTCCGCCCCTCTGCCGTGGGAGTAGCCATGTCCTTGCTCAGCCAGAGGAAGGGGCCGGCTGATCCCTGATCTCTGGTCTCAGCTGCCCAGTTCTACCCCAACAGCTGTCCTCCAGCTGATTCATGGGCGTTCTGGGTCACGGTTCCAAAGTTGACTTCAGTTATTTTGGGCATCCTTGGCATTACCTTATGGAGGAGATAGAAGCTAAGCAGTCTGGACCTAGGAAGATGTGAGGTTACTATTCGGGCCCCAGATAGGAGTAAGAGGAGCAGTGTCACATGCTGAAATTGATGTGAAGTCTTGGCAGCTCCATGTGTCCTTAGCTCTTAACCGTTTTCTCTTGGTTAAAAAGACTGTAGTCACCCACTTTGCATAGGCGAGTTACGGTCTACCCTTCCGCGAGCCCTCCCAGCGAGTTCACCAATCTGTTGCTTTCAG
Seq C2 exon
ATCCAAAAAGGGAAAGTCCACGGGAGCATAGATGTAGGACTGTCTGTCATGTCGATTAAAAAGAAGGCTCGGAGAATAGACCTCGACACAGAGGAGCACATCTATCATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]