GgaINT0047048 @ galGal3
Intron Retention
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16557726-16558569:-
Coord C1 exon
chr7:16558516-16558569
Coord A exon
chr7:16557840-16558515
Coord C2 exon
chr7:16557726-16557839
Length
676 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
ACTCTGCTTTTTGATTTCAGATA
3' ss Score
9.41
Exon sequences
Seq C1 exon
AGGTTTTTCGTCCTGGATAATGGACTGTTAAAATATTCCAAGTCACCAATTGAT
Seq A exon
GTAAGTAAAGTTGAAGACTATTTTAAAGTTAGTGTTGGAGGCTCATTCTCATGCTAGGCATGTTTATTCCAGCATACTCATGAAAGTCGTCGGTCGATTCAAAGAGATATTTGGATATGGAAAGCATGTAAGGTTTTGGTTGAGTTATATTCCCCCAGATTCTGCCTTTTATTACTTCTATAAAAACAGGAGGTGTATTAATTAGTTTATTTAATGAAGATGTTTGAAAGATTAGCCTGACCATGTATTGTACCTTTTTAATTTTAGTGTCAGGAAGAGCTGATTATTTTGAGATATGTGGATAGGACAGAAAAGTGATTGTGATGCACTCGAGATATAAGGGGTAGTATTAAATTATATTAGTTACCAATAACCATCGAGTTGTATCAGCAGGGAGCTAAGTGCTGTCTAATTTTCTCAGCTTCTCACTTAACCTGTAGTTATTTGCTAGTGTGAACCACCACACTTTCCGTTTGGAGTTGGCTCTGCACTTGTGAGATATTTTCTCATCTATAAAAGAAGGAAGTTTTTAGATTGAGTACAGGTTTTAACTTTTATGTGTCGTTATATTAAGATATTCCTAAAAAAGGATAACATTTCAGCACCAGATATTTTGCTGTTAAATATAATGAAATATGTGGTACTACCAATTTCTTACTCTGCTTTTTGATTTCAG
Seq C2 exon
ATACAGAAGGGCAAAGTGCATGGGAGCATTGATGTGGGCTTATCAGTTATGTCCATTAAAAAGAAGGCTCGCAGAATAGATCTTGATACAGAAGAACACATTTATCATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(18.9=100)
A:
NA
C2:
PF154091=PH_8=FE(41.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]