BtaINT0106015 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18533523-18533924:-
Coord C1 exon
chr2:18533811-18533924
Coord A exon
chr2:18533694-18533810
Coord C2 exon
chr2:18533523-18533693
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTCTTTTTCAATTGTTGTAGGTG
3' ss Score
9.83
Exon sequences
Seq C1 exon
ATCCAAAAAGGGAAGGTCCATGGAAGCATCGATGTGGGACTCTCTGTCATGTCAATTAAAAAGAAAGCTCGGAGAATAGACCTTGACACAGAAGAACACATCTATCATTTGAAG
Seq A exon
GTAAAGATGCCTTTCGAGGTTTCTCTGCCAATATCTGGGGAAATCATTTGCCTAGACTAGTGGATAGACAGGAGATTGGCTTCACCATTACCTGTTCCTCTTTTTCAATTGTTGTAG
Seq C2 exon
GTGAAATCCCAGGACTGGTTTGATGCATGGGTCTCCAAACTGCGCCATCATCGATTGTATCGGCAGAATGAAATTGTGAGATCACCACGAGATGCTAGTTTTCACATATTTCCTTCAACCTCCACAGCTGAATCCTCACCAGCTGCTAATGTTTCAGTTGTGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.123
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGTCCATGGAAGCATCG
R:
TGAGGATTCAGCTGTGGAGGT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]