HsaINT0118694 @ hg19
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179197368-179197768:+
Coord C1 exon
chr2:179197368-179197481
Coord A exon
chr2:179197482-179197597
Coord C2 exon
chr2:179197598-179197768
Length
116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
CCTCTCGTTCATTGTTTTAGGTG
3' ss Score
10.88
Exon sequences
Seq C1 exon
ATTCAGAAAGGAAAGGTCCATGGGAGCATAGATGTGGGACTCTCAGTCATGTCAATTAAAAAGAAAGCTCGAAGAATAGACCTTGACACCGAAGAGCACATCTATCATTTGAAG
Seq A exon
GTGAAATCAGTTTTCAACAGTTTCTCTGCCATTATCAGGGGAAACGATTTGCCTACACCAGTGGTAGGCAGGAGAGTTATTTTACAATTACTTTCTCCTCTCGTTCATTGTTTTAG
Seq C2 exon
GTGAAATCCCAGGACTGGTTTGATGCATGGGTCTCCAAACTGCGACATCATCGGTTGTATCGTCAGAATGAAATTGTGAGATCACCAAGAGATGCTAGTTTTCACATATTTCCTTCAACGTCCACAGCTGAATCCTCACCAGCTGCTAATGTTTCTGTAATGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-OSBPL6:NM_145739:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCATAGATGTGGGACT
R:
TAGCAGCTGGTGAGGATTCAG
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)