RnoINT0105823 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63404126-63404517:+
Coord C1 exon
chr3:63404126-63404239
Coord A exon
chr3:63404240-63404346
Coord C2 exon
chr3:63404347-63404517
Length
107 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GCCGTTGCTTCCCGTTGCAGGTG
3' ss Score
11.66
Exon sequences
Seq C1 exon
ATCCAAAAAGGGAAAGTCCACGGGAGCATAGATGTAGGACTGTCTGTCATGTCGATTAAAAAGAAGGCTCGGAGAATAGACCTCGACACAGAGGAGCACATCTATCATTTGAAG
Seq A exon
GTGAGATTGTTTCCGGCATCTGGCCTTAGCAGGGGATGTGATTTGCCTGCACCGGTGGCAGCCAGCGGACCGTTTCCACAGCTGTCTGCCGTTGCTTCCCGTTGCAG
Seq C2 exon
GTGAAATCCCAGGACTGGTTTGATGCCTGGGTCTCCAAACTGCGCCACCACAGGTTGTACCGTCAGAATGAAATCGTGAGGTCACCGAGAGACGCCAGTTTCCACATATTTCCTGCAACGTCAACAGCTGAGTCCTCCCCAGCCGCTAATGTCTCTGTTGTGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NA
C2:
PF154091=PH_8=PD(18.9=29.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAAAGGGAAAGTCCACGG
R:
AGCTGTTGACGTTGCAGGAAA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]