BtaINT0106265 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35429012-35429552:-
Coord C1 exon
chr15:35429332-35429552
Coord A exon
chr15:35429151-35429331
Coord C2 exon
chr15:35429012-35429150
Length
181 bp
Sequences
Splice sites
5' ss Seq
TTTGTAGGT
5' ss Score
1.17
3' ss Seq
CCATCTGATGCATGGCCCAGGTC
3' ss Score
3.46
Exon sequences
Seq C1 exon
GTATCTGTGATGGAGATGTGGCCAATGACCTCACCCTGAAGGATGGTTCTGTGGTGAGTGAGGCCGAAGACCCGGCTCCCTTTCTGGACAGCTGGCAGGTGCCCAGCTCTCTGACCTCAGTTGGCCAGACCCGCTTCCGTCCAGACAGCTGTGCCACGGCCGACTGCTCGCCCTGCCTTCGCATGGTGTCCAACCGCACGTTCAGTGCCTGCCACCGCTTT
Seq A exon
GTAGGTGTCACTGGGCTCCAGCAGGGGGGACCTCCTGGGCTGAGAACGGCAGCTCCTCTGCTCCTGTGTGCAGAAGGCAAACTCCCCAGAGGTGTTGTTCTTGGGATGGGTCGGGCTGGGAGGAGCTGAGCCCTGGCATGTGGGGGGCCAGAGTAGCAGCACCATCTGATGCATGGCCCAG
Seq C2 exon
GTCCCCCCGGAGTCGTTCTGTGACCTGTGGATCCGGGACACCAAATACGTGCAGCAGCCCTGTGTGGCACTGACCGTGTACGTGGCCATGTGCCACAAGTTCCACGTGTGCATCGAGTGGCGGCGCTCCGACCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987:ENSBTAT00000064728:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
A:
NA
C2:
PF087426=C8=FE(65.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGATGGAGATGTGGCCA
R:
TCCACAGGTCACAGAACGACT
Band lengths:
249-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development