HsaINT1025811 @ hg38
Intron Retention
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr11:17631702-17632226:+
Coord C1 exon
chr11:17631702-17631922
Coord A exon
chr11:17631923-17632087
Coord C2 exon
chr11:17632088-17632226
Length
165 bp
Sequences
Splice sites
5' ss Seq
TTTGTATGT
5' ss Score
2.51
3' ss Seq
TGCCTGATGCATATGTCCAGGTG
3' ss Score
4.94
Exon sequences
Seq C1 exon
GTATCTGTGATGGAGATGCAGCCAATGACCTTACCCTGAAGGATGGCTCAGTGGTGGGTGGGGCTGAGGACCCTGCTCCCTTTCTGGACAGCTGGCAGGTGCCCAGCTCCCTGACCTCAGTGGGCCAGACCCGCTTCCGCCCAGACAGCTGCGCCACAACTGACTGCTCGCCCTGCCTTCGCATGGTGTCCAACCGCACCTTCAGTGCCTGCCACCGCTTT
Seq A exon
GTATGTGCCAACTGGGTCCAGCACTGGGGACACCTCCTGGGCTGGCTGGGGATGGCAGCACCTACCTGCAGAGGCTCATTGTTCCTTTTGGGCAGGGAGGGGAGGAGCTGGGCACTGGGATATGTGCCATCCGAGTAACCAGCACTGCCTGATGCATATGTCCAG
Seq C2 exon
GTGCCTCCGGAGTCATTCTGTGAGCTGTGGATCCGGGACACCAAGTACGTGCAGCAGCCCTGCGTGGCCCTGACTGTGTACGTGGCCATGTGCCACAAATTTCATGTGTGCATCGAGTGGCGGCGCTCTGACTACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162:ENST00000342528:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.3=21.6),PF087426=C8=PU(31.4=29.7)
A:
NA
C2:
PF087426=C8=FE(65.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGATGGAGATGCAGCCAA
R:
AGCTCACAGAATGACTCCGGA
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains