DreINT0002578 @ danRer10
Intron Retention
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39207474-39207907:-
Coord C1 exon
chr7:39207687-39207907
Coord A exon
chr7:39207613-39207686
Coord C2 exon
chr7:39207474-39207612
Length
74 bp
Sequences
Splice sites
5' ss Seq
TATGTATGA
5' ss Score
-0.16
3' ss Seq
TACTGGAGTTTGTGTTGCAGGTT
3' ss Score
5.52
Exon sequences
Seq C1 exon
GTAGTTGTGATGGTAATCCATTAAATGATCTGACTCTGTCTAACGGTACAGTTGTGCCTGAGCAAGAGGATCCAGCCGTATTCATCGATAGCTGGCAGATTCCCAACACCACCAGCTACGTCAGCAACAGCAGGCGGCGAGAAGTCAACTGCACCACCAGTGACTGCTCTCAGTGCTTTAACATGCTGAACAACAACACCTTCACCCTCTGCCATGCTTAT
Seq A exon
GTATGACACACCAAATGCACCTGCCTCAGGTATCAACCACATCTTCAGAACACTTACTGGAGTTTGTGTTGCAG
Seq C2 exon
GTTCCTCCAGGAGTGTTCTGTGAGATGTGGGTGAGAGATGTGGAGTATGTCAATAATCCGTGTATCGCTTTGGCTGCTTATGCTGCTTCCTGCCACAAATTCAACATCTGCATGGAATGGAGGAGCTCTGATTTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460:ENSDART00000083804:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.2=21.6),PF087426=C8=PU(31.4=29.7)
A:
NA
C2:
PF087426=C8=FE(65.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGTCAACTGCACCACC
R:
AGCATAAGCAGCCAAAGCGAT
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]