BtaINT0106299 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9849737-9852078:+
Coord C1 exon
chr5:9849737-9849789
Coord A exon
chr5:9849790-9851915
Coord C2 exon
chr5:9851916-9852078
Length
2126 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TCTGTGCCTTGTTCCTGAAGTTC
3' ss Score
6.52
Exon sequences
Seq C1 exon
CCAGTGTTCAAATGGGACTGTGAAATGTGATGAATTAGCAACGCCCTCTACTG
Seq A exon
GTAAGATCTAGATAGATGTTTTTCTTAGAGAGGAGGCTCTAGTACCGTCCCTACTCTTTGGGCAGAAGTTATGAATTCATCACAGCCCCCCTTGCGAATGCACATGGAGGAATAGCCTTAGGAATGCTTTTCTACATGGTGCTCTGGTGCTTCCTAACTTTTTCACCTCCAGAATTATAATATTTGTTGGACAGTGTGGGGTGAACATGTAAGGCTGCTTAGGGCAGAGCTGATCAACCAGGGAGGCTGCCTGATGCTCCCTATCCCAGCACCACCTCAGGTCTGCCAAACGCTTTCGGGATATGTATCCAGGCACCTGTTGGAAGTCACTTGTGCAACAGCAGTTGGGAAACCCTACTCCAGATCAGCAATTCTTAAATTCCGAATGTACACACAAAAAACCTAGGGATTTTGTTAAAATATTGATTCTGATTCAGTAGGTCAGGGTGATGCCTGCAACATTTCTGTTGATGGCCAAAGTGATGCTAATGATACGGGGTTCAGGGCTACATTTTAAGTAGCAAAGCTTTAGGACTAGCCATCAATTATCAATGGTATGTAAAATGACATCGACTGCCACCTCTTTTGAAAATATATTATGATTGCATATCATTCCTGAAGATCATATATGTTAGGAGACCCTTTATATTACTTATTTTTCACCACACAGAAAGCCTCAAATTTATGGTCACTGGGGAGAAATTCTAGGCAAATACTAAACAAAGCTACCTTCTGTTGATTTTAATGGGTAGCAAGAGTGTAGGCTGATAAAACCAACTGTGAACTATTGCTTTGTTATTTATTTGCACAGTTATAAATTTTCTAAATTAGCTTTGAGTTAATTATATGCCCTTGATTCAGTGTATCAGGATTCAGGCTGTCTAGGGCTTATTTACGGAGAAGACAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGTCCATGGAGTCGCTAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCGAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGCGCTGCCATCTGTGGGGTCGCACAGAGTCGGACACAACTGAAGCAACTTAGCAGCTGCAGCAGCAGCAGGGCTTATTTACAGGGTATGTTCATGGACTGCACACATAGTTGGAAGCTGTTGGGCCCTCCCGCCCTTGACTCATTTGCATTGGGTGGCTCAATATTGAGGAAAAGGAAGCCCAGGTGGCCAGGCTTCTCGCAGAGGAATCCCCAAGTTTCCTTTTGGCCCCACATAAGAAGTGGTAATCCCTCTGAACTCAAAAGCTTTCTGGAGCAATATGTAGCCCCTGTAATTATGCCCATTTTCTGCACTTCCACATTATAGTGAAAGGAGTTAGTCACTCAGTCATGTCTGACTCCTAGTGGCCCCATGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAAGAATACTGGATAGAATACAAGGGGGTAGCCATGCCCCCTCCAGGGGATCTTGAGACCCAGGGACCCCAGGTTCGATCCCGGGCTCCCTGGGTCTCCTGCATTGCAGGCAGATCCTTTACCGTCTGAGCCACCAGGAAGGAGTTACATAAACGGTGACTCAGGGATGAAGCAAGACCTAAAAGTATCACATGTTTATTGTAAACACATAGCTTTGTAAAAGTTTAAACGTATGGTACTGTCAGTCTTCAAAAAATGATAATATATGTTTAGATTAATCACAATACCCTGTTTCTTGATTTCAGGAAGGTATATACTAGTTGTTTAGTTGTTTTCTTATGGAAGGCAGCTAAAGTTTTCAAACTCAAAATAGATTTTGGAAATTTAGGTAATTAAAGGAAATCTGGCTAGAGAATGGTTTAAGCTCATGAACCAAACATCACAGAGTAAAATCAGTTATTACTGGGGTCATCAGTAATTACTGGTAAAATATATTGTGTTCCGTAGTTAATTGAGTTTTAATGACAAACGCATGTAAATATGATTATGTGTATGGAGCAAATACAAAGTTAAACATATTTTGTCTGTGCCTTGTTCCTGAAG
Seq C2 exon
TTCACATCTGCCCTGAGGGAAAACAGTATTTCGACTGTAGGTTTCCTGACCCTCAATTACCAGCTGGTGGTATAAACTGTGAAACGACATGTGCAAATTTGGCTATGAACTTCACTTGCGCCCCATCGTCACCCTGCATAAGTGGCTGTGTTTGTGCTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336:ENSBTAT00000048210:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(77.3=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]