MmuINT0071202 @ mm9
Intron Retention
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107294024-107296003:-
Coord C1 exon
chr10:107295951-107296003
Coord A exon
chr10:107294187-107295950
Coord C2 exon
chr10:107294024-107294186
Length
1764 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATCCATGCTTGTATCTGAAGTCC
3' ss Score
2.31
Exon sequences
Seq C1 exon
CCAGTGTTCAAATGGGACTGTGAAATGTGATGAGCTAGCAACACCCTCTACTG
Seq A exon
GTGAGTTCCAGAAAAAGCTTTTCCCGAGCAGCATGCATCTCAAACACTGCCCCTGACTCTTCTGACAGAAGGCTCTTATGCACCTCCTTATCCAAGCACGGGAACATTGTAGTATCATGCATTCAGAACCACGTTCCAATGATTCCCGACTTTTTTTTCACATCACTAATAATATTTGTGGGACCGTGGAAAGTAAGTATTTAAGGCGGCTTAGAGACACTGATGGTCAGTCAAGCATGTAGCTTTTATATTGTCTACCCCAGCACCACCTCAGGTACCTGAAAGGCTTTAGGGGTATAGCCTGGATGCTGGTTGTAACGTAGTCGTGGATCAGAAAGCAGAAAATTCTATCCTAGGCCAACACGCCTCAGCTTTTAATATCCACACAACGAACTGGAGATCTTGTTAAGACTTATGATTTGATTTTGAATGCGAAGCCACCCCAGAGATTCTGAATACCTACCAATGACCAAGGCAATGCCAGTGTTTCTAGGTCCTGGGATGTGTCTGGGGAGCAAGCTTCTAGGGTTACATGCAACAAATGGAAAATAGCATACAACAAGAGTGTGGTGGCACTCTCCTGTAACCCAGCACTGAGAAAGCAGGGGGCAAAGCCATCCAGGCCTCAAGGACAGATTCAGCTATGCAGCATTAGAAGCAAACCTGGCTTGTGTAAGACTCAGTTATAAAAATGGAAAATAAAAACAAAGGGTTTATAAAATATATCCATTGCTATTTCTCTTAGACTGTAACTTTCCACTTTCCACTAGAGTATGTAGCCTGAAGGTCTACAAATTAGAGGGTCGCATAAATCTGTATTTTTGTCAGATGAATAACTTATGGACACATGGCTGTCATTCTGTTAGATAGGGATATTATGGTTCTGTTAGCTATTTAAATGTATGTGGTTAGAAATCAGCTTTGAGCTGAGCATGGTGGTGTGTCTCTATACTCATTAAAGAGGCTAAACCAGAGGGAGGACTTACAGACCAACCGAGGCTTGACAGTGAGACCCCGTCCCTTAAAACACAAAATAAAGCAATAAAATACTTTTTGAATTACACATTTACTTTATCAGGATTTAGGTCAGTCTGGGCAGGTCATGTGACTGGGCCTCAAAGCTAACACAATAGCGACTGGAAATCCTCACTTATGCCCCTTGTAGTTCAGGGTAGCTCACAGTTAAAGCAGGGATTACTAGGTAGCCTGCTTTCTCAACGGAGCCCTCACGAATCCATTCCTGTGGTCTCACCCAAGTGTCTTATTTGATCCCTGACAGCCCCAAAGACTTCTGGGAAACAGATACCCCCTGGACCCCGGTCATGCCTCCTAACAGGGGCCTCTGTACTACTCTACAGTGTAGTAGAGGTTGATGAAAATAATGACTCAGAGGCAAGGCAAGGTGAAGAAGTAACATGCATTTATTATGGCTTTGTAAATGCTTAAATGCGTATTGCAGCTTTCAGTCATTAAAATTGGTGTGTTTGAATTCATCTTGTTGACTTCAAGAAAGTATATGCTAGTTATTTAGTGAATTGTGGGGGAAGGATGGCTAAGGTTTTCAGGTTTGAAACAGCTTTTGGGAATTTTGAGATGGAACAGACTCTGGCTAGGTCGTGCTGATGAGCTCATAAACTCGGGGATCACAGAGAGCATTCTTTCACTATAGCGATCTGGTCAGTGGGTTTTGTTCGGATGATTTGTGCATAAGACTTTGGGCCAAATACAAAGTTAAAGCCGTGTTATCCATGCTTGTATCTGAAG
Seq C2 exon
TCCACGCCTGCCCAGAAGGGAAGGAATATTTTGACTGCAGGTTTCCTGACCCTGCGTTACCAGCTGGTGGTATAAACTGCGAGACGACGTGCGCAAACCTGGCCATGAACTTCACCTGTGCTCCATCCTCGCCTTGCATCAGTGGCTGCGTTTGTGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-Gm6924:NM_001177567:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(77.3=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTTCAAATGGGACTGTGA
R:
CTGCAGCACAAACGCAGC
Band lengths:
215-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: