HsaINT1025837 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80270102-80271810:+
Coord C1 exon
chr12:80270102-80270154
Coord A exon
chr12:80270155-80271647
Coord C2 exon
chr12:80271648-80271810
Length
1493 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
GTCTGTGCTTATATCTGAAGTTC
3' ss Score
4.29
Exon sequences
Seq C1 exon
CCAGTGTTCAAATGGGACTGTGAAATGTGATGAATTAGCAACGCCCTCTGCTG
Seq A exon
GTAAGATCTTAAAAGATGTTTTCCTGAATGAGGGTTCAGCTCTGATACCACCTCCACTCCTGGCAGAAGTCATCAATCACCTCTTCTTCCCAATGTGCATGGCTATAGCCTTGGGAATGTTCTTCAACATGGTGTTCCAGTGCTTCTTAACTTTTTCCACATTGAAAATTATAATATTTTTAGGACAGTCTGGGTTGAACATATAAGTCAGCTCAGGGGCGGAGCAGGTCAACCCAGGGATGCTGCCTAGATGCTGCCTACCACAGGACCACCTCAGGCATCCCAAGGACTTTAGGGATATGTATCTAGGCAAGTGTTGTAACCCATTTGTGGGACAGAAATTGGGAAAATCTATTTTAGACCTTCACTTCTCAGATTTTAGTGTGCACATATGGGGATCTTGTTAAAATGCAGATTCTGATTCATTAGGTCAGGGGTGATACCTGAAATTCTACATTTCTATCAGTGACCAAGATAACATTAATACTTCTGGTTCCTGGGCTGCATTATGAGTAGCATGGCTCTGGGACTAGTAGCAATAAATTTAACAATGCATGTAAAATGACATCCACTGTTATCCCTTCAGAATGTCATTTTAAATACCTTTCCTAAGATCTTATGTATTAGGACCATATATATTATTTATTTTCATCATATAAAGAGCCTCAAATTCTCAGTTACTATGGGCAAATTCTAGGCACATAATAAACAATACTTGCTTTCATAGATTTTAATGGGCAGGAAGAGTGTAGGCTAATAAAAGTAATTGTAAGCTATTATTGCTTTGTTATGTATTTGAATGGCCTGGTATATATTATTATTAAAGAGCTTTGAATTACATGCCCTGAATTTACTTTACAAGGATTCAGACAAGCCTAGGGCTTCTTTACAAGACATGTTTATGGACCACACACATTCGGTAGCTACAGGGCCATCCTGACTCTGCCCCATTTCTTTCAGGGTGACTCGCCCCCATTTGATTCAATGAAGGGAAGCCCAGGTGGCTAGCCTTCTCACAGAGGAACCCACGGGATTTTATCCCTTTGGCCCCACTTGAGGCAATTTATTTGATCTCTAAGAGCCCAAAAGCTTTCTGGAAGAATATGGAGCCCCTGTCCTGACTATAGTTATGTCTACTTCTGCACTTCTGTGGTATAGTGAGAACTGATATAAACAATGACTTGAGGTGAAGCAAGATTTAGAATAATCGTGTGTTCATTGTAGCTTTGTAAAAGCCACAATGCTTTTACATTATGCTTAAAAATTGATAACATATGCTGAAAAATTGATAATATATGTATGAATTAATAAAAATATCTTGTTTTTTGACTTCAGAAAATTATATTCTAGTTAGTTACTGTCTTATGGAAGGCAGCTAACATTCTCAAACTCAAAATAGGTTTAGAATAAACCTATTTTATGAATTTTGGTGTTCATATCTCCCATGCCATGACAAAAAGTTAAGGACATTTTGTCTGTGCTTATATCTGAAG
Seq C2 exon
TTCACATCTGCCCAGAGGGAAAAGAGTATTTCGACTGCAGGTTTCCTGACCCTGAATTACCAGCTGGTGGTGTTAATTGTGAGACTACATGTGCAAACCTAGCCATGAACTTCACCTGCACCCCATCCTCACCCTGTATAAGTGGCTGTGTTTGTGCTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0182612=TIL=PU(77.3=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTTCAAATGGGACTGTGA
R:
CTGGAGCACAAACACAGCCA
Band lengths:
215-1708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains