HsaEX6068044 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80265001-80278275:+
Coord C1 exon
chr12:80265001-80265210
Coord A exon
chr12:80266451-80266616
Coord C2 exon
chr12:80278168-80278275
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGATACTTCTTTGTCCTTAGCTG
3' ss Score
7.93
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTGGGTATGCAGCACACTGTGATGTCATCCACCAGGAGCTCTTTGCTCCTTGCCACATCTATATTAGCCCTGGGCTGTACTATCAGCTATGCCGCCACGATGCATGCAAGTGTGGAAGCTCCTGCCTGTGCAATGCTCTTGCCCACTATGCCTACCTCTGCGGCCAGCACGGTGTTCCCATTGATTTCAGAACTCAGATTTCTTTCTGTG
Seq A exon
CTGTGGTGTGCCAGAAGGGCATGCTGTACCATCACTGTTCCTCGTTCTGCCTCCATTCCTGCATTTCTCTCTCTTCCCCGGAGCAGTGCAGTGATGACTGTGCTGAAGGCTGTAATTGTCCGGAAGGCAAATTCTATGAAGACACTCTTAACTTTTGTGTACCCAT
Seq C2 exon
AATGGCAGAGCACAGAGGAAAGTGTTATGTTCCTGAAAGCTGCCCATGTATTTGGAAAGATTGGGAGTATCTCTCAGGAGAAGTGATTGCTACACCGTGTTACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899_MULTIEX3-1/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=100.0)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
C2:
PF0182612=TIL=PD(21.2=37.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTATGCAGCACACTGTG
R:
CATGGGCAGCTTTCAGGAACA
Band lengths:
258-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains