MmuEX6051162 @ mm10
Exon Skipping
Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107861066-107866803:-
Coord C1 exon
chr10:107866594-107866803
Coord A exon
chr10:107862145-107862310
Coord C2 exon
chr10:107861066-107861140
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGACACTTGTTTGTCCACAGCTG
3' ss Score
10.03
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTGGGTATGCAGCACACTGTGATGTCATCCACCAGGAGCTCTTTGCTCCTTGCCATGTCTACGTCAGTCCCGGGCTGTACTACCAGTTGTGTCGCCACGATGCCTGCAAATGTGGGAGCCCCTGCCTGTGTAACGCTCTCGCCCACTACGCCTACCTGTGTGGTCAGCGTGGTGTGCCCATTGATTTCAGAGCTCACATCTCCTTCTGTG
Seq A exon
CTGTGGTGTGTCAGAAGGGCATGCTGTACCACCACTGCTCGTCACTCTGCCTCCGCTCCTGCACCTCTCTCTCCTCCCCTGAGCAGTGCAAAGACGACTGTGCTGAAGGGTGCAACTGTCCTGAAGGCAAATTCTATGAAGAGACACTTAACTTTTGTGTGCCCAT
Seq C2 exon
ATATCACTGCCGGTGTCATTATAGGGGGAGCATTTACCAGCCAGGGGAGCTCATTCCAACCCCCTCAGGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-'23-21,'23-20,24-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=100.0)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
C2:
PF0182612=TIL=PD(5.4=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTATGCAGCACACTGTG
R:
GGCTGGTAAATGCTCCCCCTA
Band lengths:
252-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types