DreEX6063929 @ danRer10
Exon Skipping
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6051026-6056170:+
Coord C1 exon
chr18:6051026-6051235
Coord A exon
chr18:6053228-6053393
Coord C2 exon
chr18:6056096-6056170
Length
166 bp
Sequences
Splice sites
3' ss Seq
TATATTGTTTATGTGTGCAGGTA
3' ss Score
7.68
5' ss Seq
GCTGTACGT
5' ss Score
5.68
Exon sequences
Seq C1 exon
TGTTTTATGCTGCCCAGTGTGATGTGCTGTTGGAGGAAGTGTTTAGACCGTGTCATGCGTATGTTAGCCCCAGCATGTACCACCAGCAGTGCCGCTACCAGGCCTGTCGATGCGGCAGCAGCTGCCTCTGCACGGCTCTGTCCCACTACGCCTACATCTGCAGCAAACACCACGTCACCATCAACTTCAGAGCACACGTCTCTGAGTGCG
Seq A exon
GTATGGTGTGTTTAGGAGGGATGATGTATCACCCGTGTACATCAGCCTGCGGGCGGACGTGTCAGTCCGTCAGTAGTGCTGAAGTGTGTGATGGAGACTGTGCTGAAGGATGCAGCTGCACCGAAGGAACTTTTTATGATCACACTCGCCAGCGATGTGTGCTGCT
Seq C2 exon
CTCCCAGTGTCACTGTTACTTCATGGGCTCAGTTTTTCAGCCTGGTGAAGTGTCCTTCAGCTCTTCTGGACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(95.8=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
C2:
PF0182612=TIL=PD(5.4=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTGATGTGCTGTTGGA
R:
ACCAGGCTGAAAAACTGAGCC
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]