GgaEX7000393 @ galGal4
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39718674-39720955:+
Coord C1 exon
chr1:39718674-39718883
Coord A exon
chr1:39719711-39719876
Coord C2 exon
chr1:39720881-39720955
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCTCTTTTCTCCAGCTG
3' ss Score
11.02
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
TTGGATATGCATCTCACTGTGATATCATCAATGAAGAAGTCTTTGCTCCCTGTCATGCCTACATCAGTCCAGGATTGTACTACCAACTATGTCGCTTTGATGCCTGCAAATGTGGCAGCAGCTGTATGTGTAACTCTCTTGCACACTATGCTTACGTCTGTGGCAAGCATGGCATTGCTGTGGACTTCAGATCTCATATTTCTTACTGTG
Seq A exon
CTGCGATGTGTCACAGTGGTATGCTTTATCATCAGTGCTCTTCTTTTTGTAAACACTCCTGTGCTTCACTTTCTATGGCAAATATCTGTGGTGATGACTGTGCGGAAGGCTGTAATTGTCCTGATGGGAAATACTTTGAAGAGTCAGTCAACTTTTGTGTGTCAAT
Seq C2 exon
ATCTGCCTGTCATTGTCATTACAAGGGCAAAGTCCTACAGCCTGGAGAAATCCTCCCCTTGCCAACAGGTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=100.0)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
C2:
PF0182612=TIL=PD(5.4=11.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCTGTCATGCCTACAT
R:
CAGGAACCTGTTGGCAAGGG
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]