HsaEX6068044 @ hg19
Exon Skipping
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80658781-80661107:+
Coord C1 exon
chr12:80658781-80658990
Coord A exon
chr12:80660231-80660396
Coord C2 exon
chr12:80661033-80661107
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGATACTTCTTTGTCCTTAGCTG
3' ss Score
7.93
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTGGGTATGCAGCACACTGTGATGTCATCCACCAGGAGCTCTTTGCTCCTTGCCACATCTATATTAGCCCTGGGCTGTACTATCAGCTATGCCGCCACGATGCATGCAAGTGTGGAAGCTCCTGCCTGTGCAATGCTCTTGCCCACTATGCCTACCTCTGCGGCCAGCACGGTGTTCCCATTGATTTCAGAACTCAGATTTCTTTCTGTG
Seq A exon
CTGTGGTGTGCCAGAAGGGCATGCTGTACCATCACTGTTCCTCGTTCTGCCTCCATTCCTGCATTTCTCTCTCTTCCCCGGAGCAGTGCAGTGATGACTGTGCTGAAGGCTGTAATTGTCCGGAAGGCAAATTCTATGAAGACACTCTTAACTTTTGTGTACCCAT
Seq C2 exon
ATTCCACTGCCGTTGTCATTATAGGGGCAGTGTTTATCAACCTGGAGAGCTCATCCCCACACCCTCGGGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=100.0)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
C2:
PF0182612=TIL=PD(5.4=11.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGATGTCATCCACCAGG
R:
GGGATGAGCTCTCCAGGTTGA
Band lengths:
253-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)