HsaINT1025835 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80266451-80267327:+
Coord C1 exon
chr12:80266451-80266616
Coord A exon
chr12:80266617-80267252
Coord C2 exon
chr12:80267253-80267327
Length
636 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TTTACTTTTTCTTCGTATAGATT
3' ss Score
8.05
Exon sequences
Seq C1 exon
CTGTGGTGTGCCAGAAGGGCATGCTGTACCATCACTGTTCCTCGTTCTGCCTCCATTCCTGCATTTCTCTCTCTTCCCCGGAGCAGTGCAGTGATGACTGTGCTGAAGGCTGTAATTGTCCGGAAGGCAAATTCTATGAAGACACTCTTAACTTTTGTGTACCCAT
Seq A exon
GTAAGTCGTAGAAACAGGTTGGCAGCATCCTGTTTTAATCTCTTTTTCTCCTTACGGGCTAAATGAGCTTTCATGGAAGTTTTTGAAAAAAATATTTCTTATTGTCTTTACTTTTTTTTTTAAAAAACCCTGCAAATGTTCATCAACAGTTACAGAAATAGCTAAGGAATCTCTGATGGTTGATCTTGAAGTGTATTCCTGCTTGCTTTTACCATAGTCAAATCAATAACAAGGTTTGTGCTTCACTGTCACATGGCAAACTTTAGTAGCAGGACTTTAATATCTCAGCACTCACAAATTTCTCAATTTACACACGAAGTAAAGCCCTTTGTCTTATATATAGTGTTAAATGATATATCAGTTATGTTTCTCTGAATTGCATTCAGTGATTTTTCTTGTGACTAAAACAACACAGTTTGTGAGTTGTATTTTAGAAAACAAAATTTGGAGCTATGCAAAACTTCATGTCTAAGCAGCTTTTGCCATTTGTGTAATAGGATTGCATGCAGTCTTGTAGAATAATGCAGACCTTAGAGTGTACCTTACAATGACCAATGGAGAGCACAAGGTCAGCTTGAATTTTAGTGGTTTTTGAAAAAAATTGTATCCTATTTACTTTACTTTTTCTTCGTATAG
Seq C2 exon
ATTCCACTGCCGTTGTCATTATAGGGGCAGTGTTTATCAACCTGGAGAGCTCATCCCCACACCCTCGGGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
A:
NA
C2:
PF0182612=TIL=PD(5.4=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGGCATGCTGTACCAT
R:
CATAAGCCCGAGGGTGTGGG
Band lengths:
230-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains