MmuINT0071200 @ mm9
Intron Retention
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107298122-107299366:-
Coord C1 exon
chr10:107299201-107299366
Coord A exon
chr10:107298197-107299200
Coord C2 exon
chr10:107298122-107298196
Length
1004 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CTTCACCTTTTCCCTTACAGATA
3' ss Score
12.45
Exon sequences
Seq C1 exon
CTGTGGTGTGTCAGAAGGGCATGCTGTACCACCACTGCTCGTCACTCTGCCTCCGCTCCTGCACCTCTCTCTCCTCCCCTGAGCAGTGCAAAGACGACTGTGCTGAAGGGTGCAACTGTCCTGAAGGCAAATTCTATGAAGAGACACTTAACTTTTGTGTGCCCAT
Seq A exon
GTAAGTCACAGAGGGGGCTTGACAATAGCCAGATGGTACATGCTTTTCTTATGATAGGCCAAATGAACTTTTGTTCTTGTTTCTTTTAAATTGCTAGAATTTTCTTGTTTTATTTTGCTTTGTTTTGTTTTGCTTTGTTTTTTTGTTTGTTTCTGTTTTTTGGCTTGTGTCTTAGTTAGGGTTTTACTGCTATGAACACACACCACGACCAAGGCAAGTCTTACAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTTAGAAGTTCAGTCCATTATCTGACAGGAACATGGCAGCATCCAGGCAGGCATGGTACATACAGTTGGAGCTGAGAGTTGTATATCTTCATCTGAAGACTGTTAGCAGAATACTGGCTTCCAGGAAGGGAGAATGAGGGTCTTAAATCCCACACCCACAGTGACAGGCCACACCTACTCCAACAGGGCCACAGCTTCTAATAGTGCTACTCCTTAGGCAGAGCATATACAAACCACCACACTTTGCTTTAATGTGCTTTTTGCTTAATGTGGTAAGCTATTCACAGAAAGATGCAGAAAGCAGGAGAGATTCTACTAGTTAACCCTGAAGTTTATTCCTACTTGATTTCTCCACACCCTAATCACAAACAAGATTTGTATTTCCCTGTCATACTAGTGGTAGAATTGTATTCTCTATTCTCACTGAGAAAGTTCTTAGCCCTCACAGGGAGCGAAGACTTTTGTTTTGCACATAGGGTTAAAATATACAGTAGATGTGTTTCTCCGAAGGTCATTCAGTGACTTTTCTTGGGACCAAACAAACAGTCCAGAACTATTTGACACTCCATATCTGCAGTTACTATGTCTAGTTAGTTGTCTGTCGTTTGCACAACATAGCTTTGTGCAGTCCCATAGAGTGGTGAAAGTCTATAGTGGCCAATTGCAGAGCGAAGAGTCAACAGTCATTTTGTTTGTGTTGGGAAAAAATTATATCTTATATTATTTACTTCACCTTTTCCCTTACAG
Seq C2 exon
ATATCACTGCCGGTGTCATTATAGGGGGAGCATTTACCAGCCAGGGGAGCTCATTCCAACCCCCTCAGGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-Gm6924:NM_001177567:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
A:
NA
C2:
PF0182612=TIL=PD(5.4=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTGTCAGAAGGGCATG
R:
TGAGGGGGTTGGAATGAGCTC
Band lengths:
231-1235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: