DreINT0109065 @ danRer10
Intron Retention
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6053228-6056170:+
Coord C1 exon
chr18:6053228-6053393
Coord A exon
chr18:6053394-6056095
Coord C2 exon
chr18:6056096-6056170
Length
2702 bp
Sequences
Splice sites
5' ss Seq
GCTGTACGT
5' ss Score
5.68
3' ss Seq
CTGGGTTCATCTCCTTTCAGCTC
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTATGGTGTGTTTAGGAGGGATGATGTATCACCCGTGTACATCAGCCTGCGGGCGGACGTGTCAGTCCGTCAGTAGTGCTGAAGTGTGTGATGGAGACTGTGCTGAAGGATGCAGCTGCACCGAAGGAACTTTTTATGATCACACTCGCCAGCGATGTGTGCTGCT
Seq A exon
GTACGTCTAAATACACCGAACAACCGTACATTTCTGATCTCTAGCATATATAGTGACATTTAAAAGTTCTTTTAACTTTTTATAACAAAAAACAATGGTAACACTATATAATAACTACACACTGAAACATTTTTAAGCATTAGCAAATAGCTAATTCATTATGTGCTAAGCATTAACTCTACATTGATAAATATTAGTAAACTGTTTATAAATACAGCTACAAATGCTGTAATCTTGACTTATAAGCGCATGCAAAATGTTGTGATTGTGTTTTCATTACTAAATTAAGTTTTACATTACACTACCTGACAAAGGCTTGTCGCCTACCCAAGTTTTAGGAACAGCAAATAATAACTTGACTTCTAGTTGATCATTTGGTTTCAGAAGTGGCTTATATGAAAGACAAAGGCCTCTAGATTACGCTTATTTTAGCAAAAGGAAATATGATCATGCCTTGATGCTTAATTATTTAATTAGGACAGTAAGGTCTGACTTTGCTTAGACTAAAGTCTTTTCACTCAACAGAAATAATGTGCAGTATAGAATATAAAGTCATGCTGCAGTGAAAATAGAATGAATATTGTGCATGACTCCCATGAGCTTGGAGGACTGCATCCATACATAACTGCACGGACTCGAATAACTTATCATTAAAGTCATCTGGAATGGCAAAGAAAGCGTTCTTGCAGAACTCCCAGAGTTCATCAAGATTCTTTGGGTTCATCTTCAATGCCTCCTCCTCCATCTTACTCCAAACATTCTCAATAATGTTCAGATCTGGTAACTGGGCTGGCCAATCTTGGAGCACCTTGACCGTCTTTGCTTTCAGGAACTTTGATGTGGAGGCTGAAGTATGGGAAGGAGCGCTATCCTACTGAAGAGTTTGCCCTCTCCGGTGGTTTGTAATGTGATGGGCAGCACAAATGACTTTACACCTCAGGCTGTTGCTATTGTCATCCACTCTGCAGATCTCTCACAGGCCCCCATACTCAATGTAACCCTAAACCATGATTTTTCCTTCACCAAACTTGACTGATTTCTGAGAATCTTGGGTCCATGCGAGTTCCAATAGGTCTTCTGCAGTAATTGTGATGATTGGGATGCAGCTCAACAGATGATTCATCAGAAAAATCTACCTTCTGCCACTTTTCCAAACGATCAACTAGAAGTCAAGTTATTATTTGTTGCTCTTACAACTAGGATCGACGACAAGATTTTTGTCAGGTAGTGTATTTACAAACAAGTTATTTAAGAGTAGTTGGTCACACTATATTTTGATGGTCCGTTTGTGGAATTTAAGTTAATTGCATCTACATGCCAACTAATTCTCATTAGATTTTAAGTAGACTTAGGTTAAGGTTAGTGTGAGTTGACATGTACTTGCAAAGTTTCTTATAGTTAGTTAAATATCTGTTGAAGGAGCAGCGTCAACAGATATTAAGCAGACAGTCTACTAATACTCAAATGGACTATCAAAATAAAGTGTTACCGAATAGTTGATGGTTTTAAGATCATTCAGAATGCGTAAGCAAATGATTACTAAACTATTCAAATTAACATTTATATATCTTATTATTTAGGCATATAGTAATCTTTACTTTGTATGTAATAAATGCTTTATTAACTCAACTTCATTCAGTTTTGTGACCTAATTTAAAGCCCGCACTATGCGTGTTAAATCATAAATGAATCATTAATAAAGTATGAAAATGCTATCAGTAAGCACATTTTATATGGAAAGTCAGGAATGCAGCATTCTTAGCTGTATTTATAAACTGTCGGACTGACGCTTCCTTACTTTATTAATTCCAAAGGAAAATATGCCAAACACAAAGACTCAACAATAAATACTAAATAAAATAAAATAGAATAAAAAAAATGAGAAAATCAAAGAATGAGGGCTTCCTTTTTCATAACATGTCCACCATCTTTCACCTACATATCTTCTATTATATCACCAAGTGCATCCCCATCATTTTATTTTTCTGGAAAAAAAACCATAAAAGTGTTCCAAGCGTCTTCAAAAACAACAGCATACATCTGTTAATAATAAAGGTTATTTTCTCTAGTCACATTTAATGCCATTTCCTTAAAGCAGGCAGGTCTAAACTCGGTCCTGGAGGGCCGGTGTCCTGCAAAGTTTAGTTCCAACCCTAATCAGACACACCTGGGCTAGCTAATCGACCTCTTACAAGGCTTTCTAGAAACATCCTTGCAGGTGTGTTGAGGCAAGTTGGAGCTAAAATCTGCAGGACATCGGGCCTCCTTTGGACACCCCTGCCTTAAAGGGACAGTTCACCCAAAAGTGAAAGTCTGTCATTTACTTACTTTGTGCTTGTTTAAAACCTTCATGAGTGTTTTCCTTCTGCTAAACAAAAAAGAAGATATTTTGAAGAATGTTGGAAATCTGTAACCATTGACTTCCATGGTATTTGTTTTTCTTTTCTTTAAAATATCTAATAAATATGTGTTCAACACAAAAACAACTCAGAATGGCTAGAAACTAATTTAAGGTGAGTAAATAGTGAGTACATTTTCGTTTTGGGCACACTATTTCTTTAAGCCACCTCTTTACACTTAGTGCCTTCCAGTGAAGTGCAATGAAGTGTTGTAAACCATTTAGCGGTAAAAAGTGTTACAAAGCGTCATCTAGTGTCTTTTTTTTTTTTTTTGGATTTCTAACTGGGTTCATCTCCTTTCAG
Seq C2 exon
CTCCCAGTGTCACTGTTACTTCATGGGCTCAGTTTTTCAGCCTGGTGAAGTGTCCTTCAGCTCTTCTGGACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750:ENSDART00000092804:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(92.9=92.9)
A:
NA
C2:
PF0182612=TIL=PD(5.4=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]