RnoINT0106104 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51832870-51833698:+
Coord C1 exon
chr7:51832870-51832908
Coord A exon
chr7:51832909-51833623
Coord C2 exon
chr7:51833624-51833698
Length
715 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CTTCACCTTTTCCCTTATAGATA
3' ss Score
10.94
Exon sequences
Seq C1 exon
CAAATTCTATGAAGACACACTTAACTTTTGTGTGCCCAT
Seq A exon
GTAAGTCACAGAGGGGGCTTGACAATACCAGATGGTGTCTGCTTTTCTTCTGAGAGGCCAAATGAACGTACGCTCTTGATACACACACACACACACACACACACACACACACACACACATTTGCTTTATTTGCTTTATTTGCTTTTGCGTAATGATATGGTGAGCTACTCACAGAAAGCCACGGAAAGTACTACACACACACACACACACACACACACACACACACACACACATTTGCTTTTGCTTAATGATATGGTGAGCTACTCACAGAAAGCCACGGAAAGTACTAGTTATCCCTGAAGTTTATTCCTACTTGATTTCTCCATACCCTAACCATAAACAAGATTTATATTTTTCATACAAGTGGTAGAATTGTATTCACTATTCTCATTCAGACGGTTCGTAGCCCTCACAGGAAGTGAAGACTTTTGTTTTGCACATAGGGTTAAAATATACAGCAGATGCGTGTTTCCTAAGTTCATTCAGTGACTTTTCTTGGGACTAAGCAAACAGTCCAGATCTATTTGGGGACTTCAAATCTATAGCTACTATGTCAGGTTAGTTGTCTGTTGTTTGTACAACATAGCTTTGTGCAGTCCCATGGAGTGTTAGAAGTCTACAGTGGCCAATTACAGGACACAGCGTCATCTGTGATTTTGTTTCTGTGGGAAAAAATAAATATCTTATTTTATTTACTTCACCTTTTCCCTTATAG
Seq C2 exon
ATATCACTGCCGCTGTCATTATAGGGGGAGCATTTATCAGCCAGGGGAACTCATCCCAACACCCTCAGGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]