HsaEX1026737 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80271648-80278275:+
Coord C1 exon
chr12:80271648-80271810
Coord A exon
chr12:80275712-80275873
Coord C2 exon
chr12:80278168-80278275
Length
162 bp
Sequences
Splice sites
3' ss Seq
TCACTGTGTCTTATTTCAAGAAA
3' ss Score
6.26
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTCACATCTGCCCAGAGGGAAAAGAGTATTTCGACTGCAGGTTTCCTGACCCTGAATTACCAGCTGGTGGTGTTAATTGTGAGACTACATGTGCAAACCTAGCCATGAACTTCACCTGCACCCCATCCTCACCCTGTATAAGTGGCTGTGTTTGTGCTCCAGG
Seq A exon
AAATTGCCACAGATATCCCAGCCTTCAGCAACCACCACCCTGATTAGTCAGCAGCCATCAACATTGAAGCAAAACCCTCCTTCAGCAAAAAGATTATGGCTCCTTGAAGGCTCAGATGATCATTAACTTTTTTTTTTTGCAATAAAGTATTTTTAAATTAAG
Seq C2 exon
AATGGCAGAGCACAGAGGAAAGTGTTATGTTCCTGAAAGCTGCCCATGTATTTGGAAAGATTGGGAGTATCTCTCAGGAGAAGTGATTGCTACACCGTGTTACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899_MULTIEX3-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(77.3=92.7)
A:
NO
C2:
PF0182612=TIL=PD(21.2=37.8)
Main Inclusion Isoform:
ENST00000458043fB21758
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATTTCGACTGCAGGTTTCCT
R:
CAGGTGTAACACGGTGTAGCA
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains