BtaINT0106490 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45609211-45609835:+
Coord C1 exon
chr15:45609211-45609383
Coord A exon
chr15:45609384-45609739
Coord C2 exon
chr15:45609740-45609835
Length
356 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
3' ss Seq
GCCTTGCTCTTTTTCTTCAGATC
3' ss Score
11.63
Exon sequences
Seq C1 exon
AAATACTGTATCAACTTTCAATGTTACTGCTGGTGAATATGACTTGAGATATGTGGAGCCAGGAGAGCAAACCCTCACCATTGAGACCATCATCATACACCCACACTTCTCTACCAAGAAACCAATGGATTATGATATCGCTCTTTTGAAGATGGCTGGAGCTTTCCGTTTTG
Seq A exon
GTAAACATTTGAAGTTTACTCTGAATTGTCCACCCCATGTTCTCCAGAACTTCTGTTCCATAGCACAGTTACTAAAGTATAAATTATGTAGCATGTGCCCAAAATTTCTGGATCATGGACTTTGAGACAGAAAATCAAGGTGGGGTTCCCCTACCTGAAACTCATTTTGCTTGTGACTTTAGAGATACAATTAAGTGGAGTCAAGAAAGAGTCTGTCTTTCTTTGATAAGAGACCCCTGGAGGTGCCAGAGACATCACAAGGCCTTGGGGGATCCACCTAGATGCCCACTGGTGAGTGGCTTGTGGTGTCTCTCCCCCATGAATGAAACGAGCCCTGCCTTGCTCTTTTTCTTCAG
Seq C2 exon
ATCAGTTTGTGGGGCCCATGTGTCTTCCAGAGCCAGGGGAACGATTTAAGCCTGGATTCATTTGTACAACCGCAGGCTGGGGCCGCTTGAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCAACTTTCAATGTTACTGCTGG
R:
TTTCACTCAAGCGGCCCCA
Band lengths:
262-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development