MmuINT0114168 @ mm9
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114937873-114938468:-
Coord C1 exon
chr7:114938296-114938468
Coord A exon
chr7:114937969-114938295
Coord C2 exon
chr7:114937873-114937968
Length
327 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
3' ss Seq
TGCCTTGATCTTTTCTTCAGGAC
3' ss Score
10.21
Exon sequences
Seq C1 exon
AAACATTGCATTAACTTTGAATGTAACTGCTGGAGAACATGACTTGAGCCAAGCCGAGCCAGGAGAGCAAACACTTGCCATTGAAACCATCATCATACACCCGCAGTTCTCCACCAGAAAACCTATGATCTATGATATAGCCCTTCTGAAGATGGCTGGAACCTTCCAATTTG
Seq A exon
GTAAACATTTACAGTGGACCCTGAATAATCTATACCATAACCTTTGATCCATACTATACCTCTACAGATCATATTATGTAGCATGAGACCAGCCCTTCTGGATTATATACGAGAAGTGGAGACTTGTCCGGAGTGTCCCCTTTTTAAAATGCCTTCCTTATGGTTCTGGATGTAGGGTTATGTAGACTGAGGAGAAGGAAACTGACAAGTGACCCCTGAAGATGCCAGGCTGATCCTTAAGAGGTCTTTGGAGACTACCCACATGCCAAAAGGTGTAACTGTGTTAACTTCTCCATAAGCCAAATCCTGCCTTGATCTTTTCTTCAG
Seq C2 exon
GACAGTTTGTGAGGCCTGTGTGTCTTCCAGAGCCAGGAGAACACTTTAATGCTGGATTTATTTGTACAACTGCAGGCTGGGGTCGCTTGTCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-Ovch2:NM_172908:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTAACTTTGAATGTAACTGCTGG
R:
CTTCGGACAAGCGACCCCA
Band lengths:
262-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: