GgaINT0055925 @ galGal4
Intron Retention
Gene
ENSGALG00000005318 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr5:6870557-6871026:-
Coord C1 exon
chr5:6870854-6871026
Coord A exon
chr5:6870653-6870853
Coord C2 exon
chr5:6870557-6870652
Length
201 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
AGAAATTTCATGTATGGCAGGTT
3' ss Score
4.58
Exon sequences
Seq C1 exon
GAACCTACTCAAGTATTTGAATGTCACTGCAGGAGAGCATGACTTAAGAATCAGGGAGAATGGAGAGCAGACACTCCCTGTTAAATACATCATTAAACATCCAAACTTTGACCCCCGAAGGCCGATGAACTATGACATAGCCCTTCTCAAGCTTGATGGAACCTTCAACTTCA
Seq A exon
GTAAGACCATATTTATCTATGGCTAAAATAAAGAAGAAGCAGCACAGATAAATTATCAAATGTTAGATGAATTTTTTTAGATGCCATAAAAATAATTCCCTTTTAAAGAAGTGAGAAATGAAACACAGGGTTTTTTGTTGCTTTCTTTTTTTTGTGATGATGCTCTTCTAACTAGCTATCAAGAAATTTCATGTATGGCAG
Seq C2 exon
GTTCATCAGTTTTGCCAGCATGTCTTCCTGATCCAGGTGAAAAATTTGAAGCAGGATATATCTGCACTGCATGTGGCTGGGGCCGCTTAAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318:ENSGALT00000008522:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTACTCAAGTATTTGAATGTCAC
R:
TCTCTCTTAAGCGGCCCCAG
Band lengths:
268-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]