BtaINT0106585 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11738305-11741786:+
Coord C1 exon
chr22:11738305-11738370
Coord A exon
chr22:11738371-11741663
Coord C2 exon
chr22:11741664-11741786
Length
3293 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTCTCTTCCTAACGAGCAGGTT
3' ss Score
5.25
Exon sequences
Seq C1 exon
AATAAAGAATTTCTTCAAGAAAAAATATTGCAGAGAGCACCAACCATTTCTGAAAGAGCTAAAAAG
Seq A exon
GTAAATGTGGATTTAACTCAATTTTTCTGAGAAATTAGAAGTTTTACTTTTGTGTTTTGAAAGTGTATTTGACTAATGCTATGTTAACAGTATGAATATTACTCATTTTCTTTCAGTCTTTTCTTTAGCATGCTTGATATATTCTTTTAGCAATAGTCTATGCCTCAGTAGTACTCCGCTTTCAACTGGAATGAAAAAGTATGGTACATAATTAATTCTAAATTGTGTTAAATCACTGTTTGCAACTACCAGAGTGAGTTGGGAAGTTGGGAAGTTTCTTTGCACCATTCAGAAACAATGAAGACACCACTTCACAGCCACCTGAATAACTATAACAAAAAAGACAGTCAATAGCAAGTATTGATAAAGATGTGGAGAAATTAGAATCCTCACCCATTACTGATGGAAATGGAAGATGGTGTGGTCACTTTTGTGGCAGTTTCTCAAAAGACTGAACAAAGTTACTATATGACCCAGCAAGTCTACTCCTAGCCATACCCAAGAGAACTGAAAATTTGTACACATAAAAATACGTACATGAGTGTTCATGGAAGTATTATTCATAGCTAAAATGTGGAAACAAACTGAATGTCCATCTACTGATAAATGGATATATAAAATATCATGAACCTATACAATGGAATATTATTCAGCAGTAATAAGGAATGAAGTACTGATACATGCCATAACATGGATGTACCTTTAAAACATTATGCTAACTAAAAGACATATTCTATGATTCTACTTATGTGAAATATCCAGGACAAGCAAATGTATAGAGACAGAAAGTAGATTACTGATTGCCTGGGACTTGAGCAGATTGTAAGGGATTGGGTAGGACTACTAATGGGTATGGGATGTTTTGTGGGAAGTGGAAAGAGTGATGAAGATGATTGAAATTTGATTGTACAGATGGTTTTTCAACTCTGAACATACTAAAAATCATTGGATTGTAATACCTTGAATGGATCAGTGTTATGTGAATTATGCCTTAGCTGTTAATTTAAGAAAAGAAGCATTTAGAGAATGGCACTACCACCAACAAAAAGCTCTTGGGAATTGAAAACATTATAGAAAAAATGAAAAAATTCATTACAAAGATTTTAGGGTAAAGTTGAGGAAATTTTCCAGAAAACAGAGCCAAAAAGCCAAGAGACAGAAAAGATGAGAACATTAGAGGATTATTTGAGAAGGCTCAACATTTAAGTAAAAGGGGTTCCAGAAAAGGAAAACAGAAAAACAGAAGAAAAGATATCACTGAAAAATTATTCAAGAAAAATTTCATGAATTTCCAGTTTGAAAGAGCTGAAGTACCCAGCGCAATGAATGGAAGTAGATCAACACTAAAGCACATTACCACAGTAGCTCAGAATGCTGTTGCTGTTCAGTCACCCAGTCATGTCCAGCTCTTTACGACCCCATGGACTGCATGCAGTACACCAGGCCTCTCTGTCCCTCACCATCTCCTAAAGTTTGCCCTAGTTCGTGTTCATTGCATCAGCTCAGAATACTGGAGGTGAAAAGATCCTGTAGCCTTCCAGACAACGGGGAAAGATTACAGGTAGAATCAACAGTCATAAGGACCTCAGTAGCATCTCTGGAAAATTCCGTGGGCGGAGGAGCCTGGTAGGCTGCAGTCCATGGGATTGCAAAGAGTCAGACACGACTGAGTGACTTCACTTTCACTTTAAACTTTCATGCATTGGAGAAAGAAATGGCAACCTACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAACCTGGTGGGCTGCTGTCTATGGGGTCGCACAGAGTCGGACACAACTGAAGCGACATAGCAGCAGCAGCAGCAGCATCTCTGGAAGCCACATCACAATGGAGCTTTACGTTGAACATTAGGGAAAAAAAAATATTTTCTAACCCAGAATTGTTTTCTTTTTTTACCAGGCAAACTATTAAGTGGAGTGTGGGAATGGAATCAAATTATATTTAGAAATGTACAGCTTTAGTAAATACACCAGGCTAATAGTAGAGTTAAGTGCTTAAAGTAAGAATAGGAAAGTCATGTGATTGAGGAAGCATAGTCCTCTGCTTGATAGCGTGAGATCTGAGGTACCAAATCTCGTGTCAGTCTGATGGAACAGATCGCGGGGCTCTGGTGAGAGGCTTCCTCAAGAAGATGACACTGATGAATACCTAATGGATATGAATACGGTGAGAGGAGCTTTACATAACAGAGAATCTGGGGATAAATATGACAAGTAAGAAATAAGCAGGACTTCCCTAGTGGTCCAGTGGTTAAGAATCCACCTACCAATGCAGGGGACAGGGTTTGATCCCTGGTCCAGGAAGAGTTCACCTGCCACAGGCCGACTAAGCTCATGTGCTGCAACTACTCAGCCCACACTTCAGAGCCTGTGCTCCGACTCAGAAGTCCACACACTGCAGCTAGAAAATATACCCCCTCCTCGCTGCAATTTGAGAAAGGCTGCATGCAGCAACGAAGACCCAAAAATAAATAACTTTTTTTTAAAGAAAGCAAATGTTAACTCCAGGAGAAATAAAAAAGTTCTGCAGGAAAGAAAAGTAATTGTAATATATATGGTTCAACTGTATAGTTTATATAATCATGTATTGATTTACCCAAAATTACAGTGTATCTTGAAAAAAGAGTAGGGAATTAATAATAGGGTTAAGTTCTCATCTTCTGTAGCAAGAAGTCAATAGATAATTTCTAAAACCAGAAAAGGGGTAATAATAAGAACAGATTACTCAGAGAGATGAATATATATACATTCTAAAAGAATAAGCTAAAATGAATTGAAAGTGGTTGCCTGTGGGAAAGAAGATGAAAGTTAGGGGACTGCTCTTTTTCTTAACATTTGCACAGCTGTAGTCCTCTTGAACCGACATAAATTGTGATTTTAAAAGTTAAAATTGAAAAAAAAACCATAATCTTCTTTATCTTGAACTTATTTATTTGGAGCTTAAACTGCCCCCATTTTTTTCTTGATGTCTGAAGATAGGAAGCCATTACTCAGACTCCATCTGACTTCACATAAGAGGGATTTGGATGATATGCAGTCTCAGACTGTCAAAGTACTGGGAAAGCCAGTGGTTGTGAGTAAAGACATAGTTGAGATGAGGCACAGAAAGCAAGTGGGGGATGGTGGATGTGACTCTATATGGGAGAATTATTATCTGCTTACTGTGTTGAAGTAATAGAAGGAGAGAGAAATATGGTTGACTTTTCTATCCCGTAAGTGTCAAACACTGCCACAGCCCATGTCTCTCTTCCTAACGAGCAG
Seq C2 exon
GTTCGGAGAGTACCAGGCTCTAGTGGCCGTCTTCACAAGACAGAAGATGGTGGCTGGGAGTGGAGTGATGATGAATTTGATGAAGAAAGTGAGGAAGGAAAAGCAGCAATTTCACAACTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]