DreINT0109307 @ danRer10
Intron Retention
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19935334-19936235:-
Coord C1 exon
chr24:19936170-19936235
Coord A exon
chr24:19935457-19936169
Coord C2 exon
chr24:19935334-19935456
Length
713 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTGTGCGTGTGTGTGTGTAGGTA
3' ss Score
9.39
Exon sequences
Seq C1 exon
AATAATGAATTTCTGCAGGAGAAATTATTACACAGGGCACCTACAATTACGGAGAGAGCCAGAAAG
Seq A exon
GTAAGGAAAATACTGTTTATTGGGCATTAATTAAATTTTTAATTGTTAATGTGAGATGTTTTGTATGTAGTGGTTAATCATTTGTAATGTGTTAATAATGTTAATGTGCAGTCTTTTAGGGTCATACTATATTAGCTTAAATGATAATTATTTATCTAGTTGCTATGGTTATGTATGACACCACAAATTGATCTCACACTAGAAATAATAATAAAAAAATCAAATAAATGTATTTTATTATTATAAACTGCTTATGTTCTGTAATAGTTTAGCCCATTTTTATTTGTCTATCTTCAGCACTACCAATTAAATTCACATCAAGGACAAATTACCATACCTATTTAAGGTATTAAATCAAATACTTGTTAAATTACATATTTTATTTTGTAATCATTTTTAAATATGTTTTGAATTGCATAAAAGATTTAAACCTTTCATGTTTATTTAAATTAGTGATATATCCCATTTGTATATGTACAGCACTACCACTCAAAATCACAGTAAAAAAATATATTTAAATTATTATTTTATACAACTTATGTTTATTCTCAGTAAACTGAAAATGCTGTTTATGTCACCAGATAGGCTCAATAAAAATATTCTAAAAAAGTATGAAAAATTCTAAATGTGTTTAAAATTGCATTCCATGTATTAATTAGAATATATATTTTTTATTTGTTGCTGTGTGCGTGTGTGTGCGTGTGTGTGTGTAG
Seq C2 exon
GTACGGCGAGTTCCAGGCTCCAGTGGGAGACTCCATAAAACAGAAGATGGAGAGTGGGAATGGAGTGATGATGAACTCGATGAGGAGAGTGAGGAGGGCAAAGCTGCTGTCGCTGCCTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500:ENSDART00000147004:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]