GgaINT0091652 @ galGal3
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4830407-4830801:+
Coord C1 exon
chr2:4830407-4830472
Coord A exon
chr2:4830473-4830678
Coord C2 exon
chr2:4830679-4830801
Length
206 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCTGTCGTTGTGCTGAATAGGTG
3' ss Score
7.67
Exon sequences
Seq C1 exon
AATAAAGAGTTCTTACAAGAGAAGATGTTACAGAGAGCACCAACAATTACTGAAAGATCCAAAAAG
Seq A exon
GTACTGCAGAGCTGCTGGGCTCTTGCTGTTATGGTTGTACTAGTTTTTTAATGAGTGTTATTGTAGTACAGTACTTTCTAGATATAGCTAGATGTTTTATTAAACATTTGAATACACTGACTGAAGGTGCATTTCTCCTTTTACTACAAAACAACTCTAGAAGCAATCTCCTTGACCTGTCACTCCTCTGTCGTTGTGCTGAATAG
Seq C2 exon
GTGAGGAGAGTCCCAGGATCCAGCGGGCGTCTCCATAAGACTGAGGATGGCGGCTGGGAATGGAGTGATGATGAACTAGATGAAGAAAGTGAGGAAGGCAGAGCAGCAATTTCACAGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.727 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGATGTTACAGAGAGCACC
R:
CCTGAGCTGTGAAATTGCTGC
Band lengths:
172-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]