BtaINT0106591 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11756649-11758223:+
Coord C1 exon
chr22:11756649-11756717
Coord A exon
chr22:11756718-11758158
Coord C2 exon
chr22:11758159-11758223
Length
1441 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACT
5' ss Score
6.43
3' ss Seq
CTCTGTTTTTATGATTATAGTGG
3' ss Score
4.18
Exon sequences
Seq C1 exon
ATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCCGGCCTCGTTGATGGAAGGGATTTAGTCATAG
Seq A exon
GTAACTACTTTGTGCTCTGCCCTTGTGCCCTTGTCTCTCTGCCTATATCCTTAGGATCTAGAAAACCAGGCCTTGATTCTACTGAGTAGGTCGAATGATTCTAGGAATGGTTCTTGGCTTTGTTGAAATAGGAGGTATTGGGGATAGTTCCTTTTTTACAAAAAAGAAAAATCTCACTTCTGAATTTGCTTTGTTACCCCCAATGATAGTGAAAGTTTACCCAGGTCTCTGGGAGATCGTAGAAATGATGACAGAAGTCACAAGTTAGATAAGCTTGGCCATATCTAATCCATTTTGGGGGATGAACTCTCTCCTTGGGCAGCCAAGAGGTAAGAAAAAGTCATTATAGATTTACTCCTTAAAAAAAAGCAGGAAGTAAGAACAGGCACAGTCAGGCCACAGGTACATGTTTCTGAAGGAAAAGACTATGGTGTAGGACAAGTCAGCAGACGTGTAAAGGGCTAGATAGTAAATAGTTTAGGCCTTGTGAACCATGAACAGTCTCTGTCATTTTTAAAAAATCTATTTATTTTAATTGGAGGCTAATTACTTTACAATGTTGTAGTGGTTTTTGCCATACATTGACATGAATCAGCCATGGGTGTACATGTGTTCCCCGTCCTCATCCCACTTCCCTCCCCATCCCATCCCTCAGGGTCATCCCAGTGCACCAGCCCTGAGCACCGTGTCTCATGCATTGAACCTGGACTGGCCATCCATTTCATATATGATAATATACATGTTTCAGTGCTATTCTCTCAAATCATCCCACCCTCGCTTTCTCCTTCAGAGTCCAAAAGTCTATTCTTTACATCTGTGTCTCTTTTGCTATCTCACATATAGGGTCATTGTTACCATCTTTCTAAATTCCATATATATGCGTTAATATACTATATTGATGTTTTTCTTTATGACTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGCATTCCGTTTAATAGCTGAGTAATACTCCATTGTGTATATGTGCCACAGCTTCTTATCCGCTCGTCTGCCGATGGGCATCTAGGTTGCTCCCGTGTCCTGGCTGTTATAAACAGTGCTGCAGTGAACACTGGGGCACACGCGTCTCTGTCATTTTTATACATAGTTGGCTGATTGCTGTGCCAGGGCTTTCTGGCCCATGAATAGGCAAGTCCCACCTCTTTAACTGCAGTGTCGTTCCTTGGTTAATACAGCATCTTAAAGAAAGTTAATTTGACAATGGTAAGATTTATTTGTGCTACTTGAACTTGTATTTTAAAACACCTCTTGTTTAGGAAGCGATTTATCTTTCTGCTTACATTTTGATTGTATGTCGGAGATTGTGAACTACTGTTTAAGTTGTTAACATATGGTTAAAATGTGGATTTACGTAATTTCTGATTACTTTCTCTGTTTTTATGATTATAG
Seq C2 exon
TGGCAGCTAATTTGCAGAAGATTGTGGAAGAACCCCAGTCAAATCGATCCGTCACCTTCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927:ENSBTAT00000019872:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(18.8=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]