DreINT0109296 @ danRer10
Intron Retention
Gene
ENSDARG00000034189 | oxsr1a
Description
oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
Coordinates
chr2:24062385-24062659:+
Coord C1 exon
chr2:24062385-24062453
Coord A exon
chr2:24062454-24062594
Coord C2 exon
chr2:24062595-24062659
Length
141 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ACTCTAAACCATTTCTTTAGTTG
3' ss Score
4.12
Exon sequences
Seq C1 exon
ACACAGCAGATGGAGTGTCTCAGGAGCTTGTGTCTGCTGGACTGGTGGATGGGAGAGATCTAGTCATTG
Seq A exon
GTAAGTTTGGGCTAATTAAATTTACCAGTTAAGATACCAATGCATATATACTTTTAAATATAAAGTAGTTTGAGTTTAAAATGAAATTGCTGCTTCATACTAAAATACAAAAGTGTTATTAACTCTAAACCATTTCTTTAG
Seq C2 exon
TTGCAGCCAACTTACAGAAAATTGTTGATGATCCACAAACTCACAAAAATGTCACTTTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034189:ENSDART00000047073:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(18.8=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGATGGAGTGTCTCAGG
R:
AGCTTGAAAGTGACATTTTTGTGAGT
Band lengths:
130-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]