GgaINT0091658 @ galGal4
Intron Retention
Gene
ENSGALG00000005979 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr2:4911574-4912597:+
Coord C1 exon
chr2:4911574-4911642
Coord A exon
chr2:4911643-4912532
Coord C2 exon
chr2:4912533-4912597
Length
890 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATT
5' ss Score
7.27
3' ss Seq
GTGTGTGTGTGTGATTTCAGTTG
3' ss Score
6.93
Exon sequences
Seq C1 exon
ATACTGCTGATGGCGTGTCTCAAGAACTAATTTCAGCAGGGCTTGTTGATGGCAGAGATCTGGTAATAG
Seq A exon
GTAATTATCAATTGTTTCTTCTTCTCTAACCATTTCAGTCATTTCTGCTTCTTTAAAATGACCTGATGAGTGGGTGCTAGGAGAGTTCTCTGTGGCCTTCATTCTCTACCCCAGTGGCACTTCAAAACTGCTGGTAATTCCAGTGGCAGTTCTGTGCCCAAATATATTTAGGCAACCTTTGGTTCACAAGAATAGGTCTAGTTGGAAGGATTACAAAGCAAATGTTCCCTGTGATGTGAAATGAAAGTTAATCAATGCATTAACTAAATCAATCTCATCTGACATAGGCACTGCCAAATTGCTGCACAAGCCTGTACTGCTGACAGGTTCTGCACAAAGAGAGGTCTGGAACTCGAATCAGCCAGGCATTTTTGTTTTAAGGCAGGCTGTGGAAAGAAGTATGAAGCACTATTGCATGCAGTGCAGTTGGGCTAAGAGGCAACAGCATGTGTTGCTGCTGCTCTCAAGTGCATATGAATAACTACCTCCGAGAACAGTGTCCTAAATAAACATGGCCATGTTATGCAGCAGATGAGACTTTAACTGCTAACAGTACCCGTATATTTCAACTACACAAAGCAAAACTGTTCCTGAAATATCTAGAAGGGCTGCTAGTGTGAAAGTAAATGGATTTTCAGGCACGTTTGGAAAAGTTGTTACTACTGATTAGACTTCGAGGAAAAAGAAGACATTTTCAAAAGAAGCATTGTAACAAAAATCTTTAGATTTAAATAAACTGAGTCTAATGGAGGCCTAAACTTTTTGTATCGTTTTAAACTGTTCTATGTTTGAGTAATATAAAGAGACCTTATGAGTTTGGGATAGTTTTTCTTTGGCCTGACCTAATATTTGCCCATTTTTTCTTGTTGTGTGTGTGTGTGTGATTTCAG
Seq C2 exon
TTGCAGCTAATTTGCAGAAAATTGTGGAAGAGCCCCAAGCAAACAGATCCGTCACTTTCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979:ENSGALT00000009616:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(18.8=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]