BtaINT0108064 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009975 | PBX4
Description
pre-B-cell leukemia homeobox 4 [Source:HGNC Symbol;Acc:HGNC:13403]
Coordinates
chr7:3683198-3685738:+
Coord C1 exon
chr7:3683198-3683304
Coord A exon
chr7:3683305-3685344
Coord C2 exon
chr7:3685345-3685738
Length
2040 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTGTCTCTGCCTTTTCAGGCC
3' ss Score
11.44
Exon sequences
Seq C1 exon
GCTCCTCTGGCCCATTTCCGCTGACTGGCCCCGGAGACGCACTTATCCGCCTGCAGACGCTGGCCTGCGTCCAGCCCAGCCCCCGGGGAGGAGGCCTTCTGGCCCAG
Seq A exon
GTGAGTCTGTGGCACAACCCCAAGGCTTGTGGGGTCCCCGACCCAGTGACGAGCAGGCCTGGAGCCCCCGTGGTGGCTGGTCCTCGGGACCGGCTGCCTCAGCCACATCGTGGTCTCCGCAAGCTCTCATGAAGGGCATGACAACCAGCTGGGCCTGCCAGGCCCTCATCACGGGGATGGTGCAGGAGGGCAGAGCCGCCTCAGGGAGCTCAGCACCGTGGGCCGCTCAGCAGAGACCTCAGTCCTCACAAGACTCAGTGGGCACGGCAGGCTCTGCCTGTTGGGAAGGGGCCCTCCCTCCCCGAGGAGGCAGAGGGTGGGGTGGGAAAACGAGGCCTCGATGGTCTGAAGGTGCAGCCCCCTGAGCTCAGAGCCTTCAGCACTCCTCACTGTCCCGGCCACCCCCTCTGCTGGCGCCCAGCTGGGCCAGAGTGAAGGTCCATTTTGGCGACTGGGAGGAGCATGGGCCTCGGGTCACGGCTCTCAGGATGTGCCCTCAGGAACGTTCTCAGGGTGTGGGCCATCCCTCTCGCGGCCCCTGGGGCCTCCTGGCCCCCCACTGACAGCCACGGTGGGGGCGGCGAGGGGGCCTGGCCGCACGCTCAGGGCTGTCCTGCAGAGCTGTGCAGGCACAGGTGTAACACGGCCACCCAGCAGTGGGTAGGGTCTTATGCAGCCAGACTGTTTGCTTCAGAGTCAAACCTCCCTCCTCAGTGTACCCCTCTTAAAGATGCAGGGAATGGATGCCCGCTGGTGCAGTGCATCCCATCACCATGGCAACCCCACAGCCCACAGTGAGCACCTGGCAGAGCCAGCACTCTGATGCCACCAGGTGGCCAGCTCGTCCTGCTCTGCACTTGCCCAAGGCCCAGAGCCGCAACCACAGTAGGGGCAAGCCTGTGAGAGTAACACAGGGTGAGGGGTCCATGGACCGGGGGCCGGGTCCTGTCAGCCCCACGGAGTAAGTGGGAAAGCGTGGGATGTGGTGTGCACCCCCAACTGTGCCCCAGTCCCCTGGCGTGGGCAGGCACAGATGCTCTTCCCAAGAGAAGGTCTCCAGGCTGAGCACCCCCACTCCCCTACCACCCCCCACCCAGCTGGGCGCCGACTCCTCAGCCCTGAGCTGCCCTTTGGCTCCCAGGCCCACACTGGGCCCCAGCCTGTCACTTCCCAGGCCTGCCAGGTGAGCCCTCCCCTCCTCACTCATGTCTTCCTGCTGGGGTCCCAGGCCTGCGGTGCCCACCCCAGGGCAGAGCATGTCCCCCTGCGGCCAGCATCCCCGCCCCAGGCGCTTTCAGACTGAGGCTGAGAGCAGCAGCGCCGGCCTCCCAATTCTCTTGCCCAGCACTGTCCTCTGGCACATGTGGGAGGTAACAGCTGTGGGGAGAGGGGGAAGGGAGCAGGGTCTTGGGCCTCGTGGGGCTGGATGCATTAGAGGGTGCAGGCAGGAGGGTTCAGCCTGTTCAGGAAGGTTTGAGAATGAGGAAAGAGAAGGGGAGCTTGTGCGTTATTGCTCTCGTGGGCTGCACGCAGGACTCACCTTAGAGCAGACAGCCATTGTCAACAGTGGTTTCCAGGGGGAGGGGTCTGTGGATGAACACCCCATGGTCACGTGTGCCCAGTACATCCCCACACCGCAGACAGAGTCCCCCCAGCCAGCGGCCATGGGCCCTTCCGTCCTAACTCCAGTCAGGTGCACGTCCTGCTGGGTTCAGGGTTCCTGAACCTCTTGCTGCTCAGCACATCTCACCACAGTCTTTCAGGGCCCACTGTTAGCTCCAGGCCTGCCTGGGTCTCCCTCCCCCTCAGAGCACGTACCATGGTGCCCCGTCCCTCCCCTGCCAGCGCCCGGCTAGCGGAAGCAGACCCTGCCAAGGAAGCACGTCCATGTGGAGGCCAGCTGCGACTCAGGGCAGACCCCTGCGTCCCCCCGTCTCCTGGCTCCTCTCGCAGCTCTCAGCACGTTCTAAGGGACGTGGAGGCTGGACGGGCCACCAGTCTTCACGGCCCCCCTCTGAGTCTCTGTCTCTGCCTTTTCAG
Seq C2 exon
GCCAGGGGCGGCTGGCAGGTGAAGCAAATGCCAACCGCTTCACCCGTTGGCAACCCCGGCAGTGTCACCTCAGATGCATCTAATTAAGTGTTGGGGCGAGCAGAAAAGAGGACGGTGTGACCTGCTGTGGTTCCCTGGCCCTCGAGTTCCTTCAGAAAACCCAGAGCTGACAGCAGAGGGCTCTCCCTAAGCCACCAGCCAGAGACACTGACGCCATCGTCCGCTTATCAGCTGGGATTTGAAACAGCTTGAGATGCTGCTTATTCTCCCAACTCTTGTCTTTATATTTATACATACATATATATATATATAGTAATTTTATGGTTAAGACTATGAACTATTTCTACAGGAAATTCTGGTACCAATTCTGCCATTAAAATTTTGAACTGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009975:ENSBTAT00000013152:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]