BtaINT0109192 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024888 | PDE5A
Description
Bos taurus phosphodiesterase 5A, cGMP-specific (PDE5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174417]
Coordinates
chr6:7055332-7060207:+
Coord C1 exon
chr6:7055332-7055395
Coord A exon
chr6:7055396-7060132
Coord C2 exon
chr6:7060133-7060207
Length
4737 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
TAGTCTGTTATTGATTTCAGATA
3' ss Score
5.57
Exon sequences
Seq C1 exon
AGCGATGCTGATGACAGCTTGTGATCTTTCTGCAATTACAAAACCCTGGCCTATTCAACAACGG
Seq A exon
GTATGTTGTTTAGTGATGAAAAAGTAGTAATTAAAAGTCAAAGTATGTGATGATTTGAGAGAATAGCATTGAAACATGTATATTACCATACGTGAAACACATCGCCAGCCCAGGTTTGATGCATGAGACAGGGTACTCAGGGCTGGTGCACTGGGATGACCCAGAGGCATGGGATAGGGAGGGAGGTGGGAGGGGGGTTCAGGATGGGGAACACATGTATACCCGTGGCTAATTCATGTCAATGTATGGCAAAACCAATACAGTATTATAAAGTAATTAGTCTCCAATTAAAACAAATAAATACAAATTTTTTTTAAGTCAAAGTATGAAAAACCTTTACTCTTAAATGTAGCTTTTAAAGTACTTGGGAAACTTTTAATCTAAACTTTAAGTAGTATTAATAGCAGATAATTGGACATAAACACTTTTCTTTTTTAGAACACTTGTTATGACTTAATAATTATTAACACAGCAAAAACCTAGCTGTTGATAAAGTTTAATTCCAGTACTGTTTTTAGCTCAGTTTTTTTTTTTTTAAGCACATCCCTTTAATAGTCTTAATAATTAGAAGACACAAACTCCATTTTCTTGGAGTTAGCCTACTAGGCTGTACTTCAACTCTAAATAGGCATTAACAAGTAGAACTTAAACATTTCTGGTGCTCATAAATATAGGACATGTTGATATAAGATATGCAGAAGGTGCTAATTAGAGCCCGGGGTCAGGTGGCTAGAAATATATCGTCTCTCCAAATAAGTCAGTGCCGTAGCCTTGTGCTGAGGCATAAAGGCCGTAGGCTAAACATAAGGGGGGCGGGGGGTTTCCACGCGATGATGTGTATATTGTGTTTGTTTTCTGAGACTGCATTGTCAATCCTAAATGTACTACCTGAGATTATTGACAGTTGCTGCTGGTCACAACTATGGGGTACATAGTCATGGAGCCCAGGAATGACAGGCTCGTCTCCTGAACCACGTGCTGACAAGACAATATCAGGAATGCACTCTCCAGGTGCCAAAGATGACATGCCATAAGCACGCGAGAAATGTCTCTACAGACCTTCCTGCTCCATAATAAGTAACACTACATGCCCATTTCAAAACAGGAAAGAGAATGGACGAGGAAAGAATTTCTTTCTTTCTCTTTCTTTTGAATCAGACTCTGAAAACATAGTGCAGTGAAGCTGGGGTCCAGACAAAAAGCAGCACTATAAAGCCGCTATAATTAAAACAGTTTGGAATTGGTATCAGACCCGTGGACACAATAGGACACCGAGAACTGCATAGAACACTTACATGATTAAGATAGCATTGCAAATAACTGGGGGAAAGACAGACTTTACTAAATAATGTTAGGATGGTTTTCCCATCTTCCATAGCCAGATGGCAAAAGATGAAACTGGATCTATTCTGCATACTTAAATTCCAAATGGACCATAGAGCTCAGTGTAGACAATTAAACCATGCAAGTACTAAGTAAAAACATTTGTGGATTCTTTTATAACTGAGGAGTGAAAAAACTTTCCTAATTACGGCTCCATAGGCAGAAACAATAAAGACTGACAAATTTGATTACATGAAAATAAAAAATTAAGAAAACTTTTTTGCATGACAAAGACACAATAAGCAAAAACAGACAATGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTACCTTCTCCGAACAATGAGAAATAGGTAAAAATATTTACAACTTTTATCTGATAGCTAATATCCATAATATCAAAGAACTTCTTAAACATAAAGAAAACAGCTAACAATCCTACTGGAAAATGGGCCAAGATTTGAACAAAAAGTTGATAGAGAAAGAAATGCGAATGGCTCTTACTCATTTGAAAAGGTCTCAGAACCTCAATCACAAGGAAAGATGCAAATTAAAACTGTACTGACAAAAAACGACTTGTCCAGAATCTCATAACAGCATTATTCCCAATAGTCAGAAACTAGAAACATCCACATGTCCCTCAACAGGAGAGTGGATACATGCATTGCAGCGCACTGCCTCACACAGTGCCGCTCTGCTCAACAGTAGAAGGAAGCTGACGCCGACGCAGGCAACGCCATGGACAAGTCTCACCAACAGTATATATCCAGTGAAAGCAGCCGGACGCAAAAGAACACGTACTGTGATTCATTTATGTCGCTTTCTAGAAAAGGCAAAACTAATCAGTGGTGAAGGAAATGAGGATAGTGGCTGAGTGGGGAGGAAGCAAAGCAGGTTCGGTGACTCACGGAGAAGGGCCTGAGGGCAACTTCTGGGTGATATAAACACTGTTTCTTGGTTGGGGTATGTGTTAACCTAGTCACATGCATTTGTGACTGCAGACCCATGATCTATGCCATTCACTGAAAAAAAAAAAAAACACACTAAGACACCATTTCTCAACTGTCTGATTGGCAAACATTTAAAGATTTTACAGCATACTCTGTTGGGGAAGCTGTGGGAAAACAAGAAATGCAAAATATTGTAACTGTTTGGGAATATATGATTACACATACTCATTTACTATTACTTCTAGGAATCTTATCTCAAAGATATACTGCCAAGAATATAAAAATACATTTACATAGACTATTCATTTTAGTGCTGTTGGTCATAGCAAAGACAAGAAATAGCCCAAGTGTTCATTAATATGGTACTAAGTAAACTGTAGTATTTATTTATATGATGAAGTCTCTGCAACAGTAAAAAGAAAGGAGCACTTTCTATATACTACTATGGGGTGATTTCAAAGATATAAGTAAAAAAGAAAAAGCAAGGAAGAGAAAATGGGTATGGTATGCTACCATTTATCTGAGAAGGCAATGGAATATGAATGTATGTACTTATATTTGCATATAGTTTTAAAAAGCAGGATTAACTGTTAAAAAGTTAATGATTTCCCACGGGGAAGGAAGGAATAAGATTGAGGGAACAGAGATATAAGGTAGGGTTGCTTGCATGTACTTGTTTTGTAGATTTAATTTAGGAACCATGTAAATTGTGTTTATAAAGTTGAACTTTAAAAAAATCACATAACCTGGGAAGCAAAATGCAACAATGTGATTTTGGTTGCAAAACCACACTGAGGGGGACAGTTTTATTCCAAGAGATTTAAAACCGTTACTTGACCATGTAACTCCAGTCGATGTACACTAAGAAGAACAACAGCAAACCATTAAAGCTGTTTTTCAGTAATCATATTAGGGGAAATTTTGTATATATATTCAGTCACCATAGTGGATGATGTGGGTAAAAGCAAATGAGAAATTCTATTGATATTGTTGAGAGGTAGGATTTTTAGTGTGAGTAGAAAGATAGAGATCCAAGATGGATAAGGTTTTGCAGAAATCCTATAGTCCTGATTTGAATAGGAATTACTATATGAACTTACATTGTGTAAGCTCCATTCATTAAAAGGGCTTAAAAATAACCAACACCCTGGTAGAAATGAACGAGCCTTGTGCCCTGATTGAAGTTTCTAAATACCTCAGTTTAAAAGAATGAGGACTCCATGAAGAAATGGCTGATTGCCCGTTCCAAAACAGGAAATGTACAAGATGAGCTAAGAACATCTTGTAATAGCAGAAAGCAAGAACTATCAAAGACTGATAGAGCCGTGTCAGAAGAGCAAAGAGGCCAACTGAGTTGGCCAAAATGGAACAATGTGGGTGGGCATCAGTAAGGACCGAAATACATTAAATACGTTTAAATCCAAAGTTCAAAATAATAATAAAAATAATAAAGCCTTCTTCAGTCATGTTTGTTGGATGCTGGAGAACTGAGTTATTATTTTTTTCCAATGGTAATTATACTAGAGAAAATCAAGTTATTTCTCCTTTATTTATACAAATTATACTTCAGGGTAACTAAAAATTGATGTGGGGGACTTATTCTATTTCAGCTATAAAGAAAAAGGGAATGATTGCTTTGTATATTACTTTTTGCAGCCTCTAAATTAATGGATCCAGGCAAAGCTCATGAAGGACTGTTAATATCACAAAGAGAGGCGACCAGGCATTCCATTGTCAGAAGTACATGGCACAGCCTGAGAAACAGTCGTAGCAAAAAAAAAACAAAACTCAATCGAATCAAGTGTCTAGATCTCATTACTGGTGTATGGAAATACAGGGAACAGAGAAACATTAAATTTCATTATGGAAACACAATCAGCAAAATCCAGACAACAGGAGGAACAACGCAGTTTATTCAACAGCAGTCAAAATCATACGGACATTTTTTAAAAAGAGAGACGAAGAGGAATTGGTAGACTGAAAGAAACCTAAGAGGCATGGCAGTCAGCCTCAGTATAAGGACCTACCTGATCCTGTGTTTCTCGCAGCGCCTGGTATAACCGGTGCTTAATATCTCACTGATTATGCGTATGGATGGGCACACAGTGCTTTCTTCCCACTACTGCGGAGGCGGAAATAACATGTTGCTCTTTTCTCTGAGTTATAGATTACAGACTCTAGCCTTTGTGATTAGGTACACATTACAATAAAGTATTTACTGTTACTGCTTTATTCTAATTTTACTGATGTGGTTAAAAGCCACAGATTTGATGGGTTTTATTATCTTCATTTAAAGTCTGTTTTACTGAGTGATATGCCTTTAATTACCCACACTTAGTCTGTTATTGATTTCAG
Seq C2 exon
ATAGCAGAACTTGTTGCCACTGAATTTTTTGACCAAGGAGATAGAGAGAGGAAAGAACTCAACATAGAGCCCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024888:ENSBTAT00000014479:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(8.8=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]